Factsheet for Solyc07g063100.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g011700.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27500.1	Solyc02g011700.1.1	AT2G18960.1	12182706
AT4G27500.1	Solyc02g011700.1.1	AT2G18960.1	16279950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032400	Potato	nucleus	92.68	92.53
Solyc12g013860.1.1	Tomato	unclear	30.73	58.13
KRH22077	Soybean	endoplasmic reticulum	50.8	51.79
KRH27251	Soybean	endoplasmic reticulum, nucleus	48.57	50.5
VIT_19s0014g02640.t01	Wine grape	extracellular, nucleus	44.75	49.65
Bra019045.1-P	Field mustard	nucleus	46.82	48.59
CDY29843	Canola	nucleus	46.18	48.33
CDX89242	Canola	cytoskeleton, cytosol, nucleus	32.32	47.32
AT4G27500.1	Thale cress	nucleus	46.02	47.22
CDX97389	Canola	nucleus	46.18	47.08
CDY14276	Canola	nucleus	46.18	46.62
Bra026343.1-P	Field mustard	nucleus	45.38	44.95
CDY56314	Canola	nucleus	32.96	44.52
CDY56315	Canola	nucleus	7.48	44.34
KRH55252	Soybean	nucleus	46.02	43.46
GSMUA_Achr6P21610_001	Banana	cytosol	29.46	43.33
CDY19058	Canola	endoplasmic reticulum, nucleus, plastid	40.61	41.87
HORVU2Hr1G081330.1	Barley	cytosol, nucleus	22.61	41.64
EER96610	Sorghum	nucleus	39.97	40.68
HORVU5Hr1G041880.1	Barley	nucleus	39.33	39.71
Zm00001d005636_P001	Maize	nucleus	38.69	39.38
HORVU4Hr1G058930.1	Barley	nucleus	34.55	39.24
Os08t0390000-02	Rice	nucleus	38.69	39.13
TraesCS5A01G186800.1	Wheat	nucleus	38.22	38.71
EER96609	Sorghum	cytosol	19.59	38.56
Zm00001d020175_P002	Maize	golgi, plasma membrane	39.49	38.51
Os09t0346400-01	Rice	golgi, plasma membrane	38.38	38.44
Bra010401.1-P	Field mustard	nucleus	45.7	38.42
TraesCS5B01G185200.2	Wheat	nucleus	38.53	38.41
TraesCS5D01G192100.1	Wheat	nucleus	39.01	38.4
HORVU0Hr1G030120.1	Barley	nucleus, plastid	39.33	36.7
CDY24116	Canola	nucleus	21.66	34.17
Bra001590.1-P	Field mustard	nucleus	32.01	33.95
Bra019016.1-P	Field mustard	nucleus	21.18	33.5
CDX98546	Canola	nucleus	30.1	33.45
AT3G15340.3	Thale cress	nucleus	30.73	32.77
CDY26009	Canola	nucleus	20.86	32.75
AT5G36780.1	Thale cress	nucleus	29.78	32.47
AT5G36690.1	Thale cress	nucleus	29.78	32.47
Bra027261.1-P	Field mustard	nucleus	28.5	31.63
AT1G53110.1	Thale cress	nucleus	21.97	31.44
CDX97649	Canola	nucleus	27.55	31.28
CDX75821	Canola	nucleus	30.1	30.98
CDX82440	Canola	nucleus	30.41	30.96
Solyc05g008780.2.1	Tomato	nucleus	20.38	8.3

Protein Annotations

EnsemblPlants:Solyc07g063100.2.1	EnsemblPlantsGene:Solyc07g063100.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0010155	GO:GO:0016020
GO:GO:0016021	InterPro:PPI	ncoils:Coil	PANTHER:PTHR32219	PANTHER:PTHR32219:SF2	SEG:seg
TMHMM:TMhelix	UniParc:UPI000276BC33	UniProt:K4CGZ3	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr7:-:65670631..65674479

Molecular Weight (calculated)

71111.1 Da

IEP (calculated)

9.673

GRAVY (calculated)

-0.877

Length

628 amino acids

Sequence
(BLAST)

001: MGVEVEAKLV HVPVEAGTEQ INLLKENGKP NHVSGITEPI KFGSHGTEEP KEEISRIPVS NVPKDAVEDW PEPKQVHSFY TVKFRRFDDP KLKARIELAE
101: KELQKKNQAR SQIIEKLKAK RAEKSIFIEQ RKALSAENKE FRSAIDGKIK EMAPLHEALG QLRGSRNAGR ERGPTVCSSE EELNHLIKGL QYRIQHESIP
201: LNEEKQILRE IKQLEGTRED VKKVAAARAQ IHETMGEKES IQSQVKLMNV GLDGVRKGQQ EVKGRLKIID DQIDAINKQI GILDEELKDV VEKRDKTYEH
301: ILELRKQREE GNSSFYQNSN VLHKVKQLAD QKDVGALKEL SVTEVDKFIS LWCGSKSFRD DYERRLLQSL DIRQLSRDGR MRNPDEKPLV LPEAPTVSRA
401: EVPARANAKP VKEDHAPVDA APIQKEQQEV SGKQLNDARG KNSKSTEKKA VVDDDEEIYG LDLHKDSKPK KIEIDEATLK EMKKEEEMAK NKQAMERKRK
501: LAEKAAAKAA KKAQLEAEKK LKEREKKAKK KSGASAAGQE PIEEPTETPE EIAEEENAEE TVETAVAPKV KARKENTIRH RATRARGSEL PKAILKRKKA
601: TNYWLWAAAP AALAILVLLV IGYMYLQK

Best Arabidopsis Sequence Match ( AT4G27500.1 )
(BLAST)

001: MGVEVVNSGG FEVAPAPFEG KPEKNGKLDQ GKGDDAPINF GSVGELPKNA EENNNKVVNS DAPKNAAEEW PVAKQIHSFY LVKYRSYADP KIKAKLDLAD
101: KELEKLNKAR TGVLDKLRAK RAERSELFDL LDPLKSERKG FNTMFDEKRK EMEPLQQALG KLRSNDGGSA RGPAICSSEE ELNSMIYSYQ YRIQHESIPL
201: TEEKQILKEI RLLEGTRDKV IANAAMRAKI KESMGQKDDI QGQVKLMGAG LDGVKKERQA ISARINELSE KLKATKDEIT VLENELKTVS EKRDKAYSNI
301: HDLRRQRDET NSEYYQNRTV LNKARDLAAQ KNISELEALA NAEVEKFISL WCSKKNFRED YEKRILQSLD SRQLSRDGRM RNPDEKPLIA PEAAPSKATP
401: SETEVVPKAK AKPQPKEEPV SAPKPDATVA QNTEKAKDAV KVKNVADDDD DEVYGLGKPQ KEEKPVDAAT AKEMRKQEEI AKAKQAMERK KKLAEKAAAK
501: AAIRAQKEAE KKEKKEQEKK AKKKTGGNTE TETEEVPEAS EEEIEAPVQE EKPQKEKVFK EKPIRNRTRG RGPETIPRAI LKRKKSTNYW VYAAPAALVV
601: LLLLVLGYYY VL

Arabidopsis Description

PPI1Proton pump-interactor 1 [Source:UniProtKB/Swiss-Prot;Acc:O23144]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.