Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH66595 | Soybean | nucleus | 3.44 | 43.09 |
| VIT_18s0122g00410.t01 | Wine grape | nucleus | 23.8 | 24.85 |
| KRH00096 | Soybean | nucleus | 6.55 | 23.93 |
| KRH49503 | Soybean | endoplasmic reticulum | 19.91 | 23.69 |
| AT1G20970.1 | Thale cress | nucleus | 20.49 | 23.17 |
| CDY29491 | Canola | nucleus | 20.62 | 23.04 |
| CDY04588 | Canola | nucleus | 20.36 | 22.95 |
| Bra025862.1-P | Field mustard | nucleus | 20.69 | 22.75 |
| GSMUA_AchrUn_... | Banana | nucleus | 18.22 | 22.39 |
| KRG89178 | Soybean | endoplasmic reticulum, nucleus | 20.43 | 20.99 |
| Zm00001d015046_P002 | Maize | cytosol, extracellular, mitochondrion, nucleus | 2.98 | 20.44 |
| Solyc07g063100.2.1 | Tomato | nucleus | 8.3 | 20.38 |
| GSMUA_Achr7P20610_001 | Banana | nucleus | 17.57 | 19.51 |
| HORVU5Hr1G073990.1 | Barley | mitochondrion | 13.04 | 18.98 |
| Solyc12g013860.1.1 | Tomato | unclear | 4.02 | 18.67 |
| Zm00001d027914_P001 | Maize | nucleus | 2.85 | 17.89 |
| TraesCS5D01G277600.3 | Wheat | nucleus | 15.69 | 17.09 |
| TraesCS5B01G270000.2 | Wheat | golgi | 15.95 | 16.8 |
| Zm00001d020965_P005 | Maize | nucleus | 14.53 | 16.67 |
| OQU89707 | Sorghum | nucleus | 16.15 | 16.35 |
| TraesCS5A01G269500.1 | Wheat | golgi | 15.05 | 16.17 |
| Zm00001d006041_P002 | Maize | nucleus | 15.69 | 15.34 |
| Zm00001d021166_P001 | Maize | cytosol | 3.24 | 14.66 |
Protein Annotations
| EnsemblPlants:Solyc05g008780.2.1 | EnsemblPlantsGene:Solyc05g008780.2 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | ncoils:Coil |
| PANTHER:PTHR32219 | PANTHER:PTHR32219:SF6 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002766695 | UniProt:K4BX52 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5:-:3003423..3014261
Molecular Weight (calculated)
170001.0 Da
IEP (calculated)
4.501
GRAVY (calculated)
-0.895
Length
1542 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEHNPASEIT GIEEMSGKSG GSEKGNDDEK LRNISAEAAN TGCSGEKIQC DQSVKTENAD TDGDQGELSM VAEIKGVNER GGDFDGGVNL ICEESANADK
0101: VESNGQKVCS TEIKAVEEIM GESNGSWKND KSVDAEKGDI NNSMDIDPVT ETMVSMEGMR GESTGPHRSN DGRRLSEESA DIEKLESNGQ RKPITVTEIK
0201: AVEEISGESN GSSKNDKSVD DGKGGINSSM AINPVTETVR MEETRGESSG PHRSNDNKRL NEESAGAEKV VSSEDKSLSD QLENAGSEDS KKQLAPNMIT
0301: KIKGISEIGG NSNCDVKLVR EGSVDAVKIE INGQRAPSTV TEIGEIRSES NGSSKIDERA DAEKASGNNS MATKIVTEIS ALEGQSNGAE KINIISEITG
0401: MDVESNGAEE IGNDELVHQE STNIEKAESQ GQKISHIVSE IKEIEDIEGE SDVANKRTDG NSTSEDRKDD EVANNSTPVH KGIDAVTSGK ESVNSLHDDV
0501: QNVCNTVFDT KSNDEIGSKF DGDNIDDKAV HERDEDSERL RFDSLASEGM SSDAELSHGP SVLADARLSE VDTSFTSFSR DMSSNDAVAL GNEATDSRIS
0601: HGQSPADMVQ EIIGKAVGSE SNDVDRSSND KLMCEDFEDD KSFNYSSPAA EGMSCNAEFS QGLSTSVDSK ISEVGNYCAS NTEDVCSNDT GGAENEDLNS
0701: STDDPQLPGP NLIRDGSGVE NLEGELNGGD NSINKEILNK KCEDPEKSNN NSDNVRVHSD AEFSIDQSVL ADVKLCKAGN SSASSIKDEC RDVVCGSTLN
0801: DPIRECKMVP DMATEFSDIK KEGESSVADQ TSDDKFIHES VDAEKPPSIS IDERMSCNDE SSQDQATIAD LELSEAGNTS SGRDVSSFDA MTLENETLTC
0901: PIEIDQESAN TSIEIAGSEE MTGGSDRSND DELKCEQSGN AEISKTNEVL ASSAECSSVD VAAVKDINQI AAKGFYFLIR MPRFDDEKIR ECIKVAEQNV
1001: DEKTQQRDAF RQKIRNKRAN CQTHGTEFEA AKAQERDARK QVRTKRADIS SLQDIIDKAK NAVAVTEIDN RICNMEHIIG HETVPLKEEK LLIREIKQLK
1101: QLRGQLSSNI GSQDEVQKSL DEREVNEERL RALKKELDSL KVKVSKAETI AMAASRKFED ESRKLKELQA QFKAADDVRQ EAYEELRNLK KGLYEKNIHF
1201: RTYKDEATLA SDHARKREME TLNHLCVDQV ERYMDLWNKN DEFRKDYIRC NTRSTVRRFG TLDGRSLGPD EEPAVLPSYR LERVNRMVSS VDKVSSMSQR
1301: PVSQLVKQVV VLKDEINDDS IVVPAAEGMK QVEKTKEARK PIQRESTVEE PKEAEPVQTA EELEAARKEE ELRKREEEAR LKEQRRLEEI AKAKEALERK
1401: KRNAEKAQLR AEMRAQKEEE QRLKEKEKKL RKRERKKGSV GETQSETNDG EAALISTSLR ETVKEPDATE NSQTLTRRKQ KSSQYTKQMK TKSIPPPPRI
1501: KGKRKWQQWL WLFLSCAVVI ALFFLGNIGF FSHLKPPKNP AY
0101: VESNGQKVCS TEIKAVEEIM GESNGSWKND KSVDAEKGDI NNSMDIDPVT ETMVSMEGMR GESTGPHRSN DGRRLSEESA DIEKLESNGQ RKPITVTEIK
0201: AVEEISGESN GSSKNDKSVD DGKGGINSSM AINPVTETVR MEETRGESSG PHRSNDNKRL NEESAGAEKV VSSEDKSLSD QLENAGSEDS KKQLAPNMIT
0301: KIKGISEIGG NSNCDVKLVR EGSVDAVKIE INGQRAPSTV TEIGEIRSES NGSSKIDERA DAEKASGNNS MATKIVTEIS ALEGQSNGAE KINIISEITG
0401: MDVESNGAEE IGNDELVHQE STNIEKAESQ GQKISHIVSE IKEIEDIEGE SDVANKRTDG NSTSEDRKDD EVANNSTPVH KGIDAVTSGK ESVNSLHDDV
0501: QNVCNTVFDT KSNDEIGSKF DGDNIDDKAV HERDEDSERL RFDSLASEGM SSDAELSHGP SVLADARLSE VDTSFTSFSR DMSSNDAVAL GNEATDSRIS
0601: HGQSPADMVQ EIIGKAVGSE SNDVDRSSND KLMCEDFEDD KSFNYSSPAA EGMSCNAEFS QGLSTSVDSK ISEVGNYCAS NTEDVCSNDT GGAENEDLNS
0701: STDDPQLPGP NLIRDGSGVE NLEGELNGGD NSINKEILNK KCEDPEKSNN NSDNVRVHSD AEFSIDQSVL ADVKLCKAGN SSASSIKDEC RDVVCGSTLN
0801: DPIRECKMVP DMATEFSDIK KEGESSVADQ TSDDKFIHES VDAEKPPSIS IDERMSCNDE SSQDQATIAD LELSEAGNTS SGRDVSSFDA MTLENETLTC
0901: PIEIDQESAN TSIEIAGSEE MTGGSDRSND DELKCEQSGN AEISKTNEVL ASSAECSSVD VAAVKDINQI AAKGFYFLIR MPRFDDEKIR ECIKVAEQNV
1001: DEKTQQRDAF RQKIRNKRAN CQTHGTEFEA AKAQERDARK QVRTKRADIS SLQDIIDKAK NAVAVTEIDN RICNMEHIIG HETVPLKEEK LLIREIKQLK
1101: QLRGQLSSNI GSQDEVQKSL DEREVNEERL RALKKELDSL KVKVSKAETI AMAASRKFED ESRKLKELQA QFKAADDVRQ EAYEELRNLK KGLYEKNIHF
1201: RTYKDEATLA SDHARKREME TLNHLCVDQV ERYMDLWNKN DEFRKDYIRC NTRSTVRRFG TLDGRSLGPD EEPAVLPSYR LERVNRMVSS VDKVSSMSQR
1301: PVSQLVKQVV VLKDEINDDS IVVPAAEGMK QVEKTKEARK PIQRESTVEE PKEAEPVQTA EELEAARKEE ELRKREEEAR LKEQRRLEEI AKAKEALERK
1401: KRNAEKAQLR AEMRAQKEEE QRLKEKEKKL RKRERKKGSV GETQSETNDG EAALISTSLR ETVKEPDATE NSQTLTRRKQ KSSQYTKQMK TKSIPPPPRI
1501: KGKRKWQQWL WLFLSCAVVI ALFFLGNIGF FSHLKPPKNP AY
0001: MPVEVERDQG EVSVKVDFEN ATEIKPEVVV SATKEDVVNG ISHGGSNNGN GNDTDGSYDF ITENDTVGDD FVESDYVKPV DDANVEKDLK EGENVKVDAP
0101: SIADDDVLGV SQDSQTLEKS ELESTDDGPE EVVEIPKSEV EDSLEKSVDQ QHPGNGHLES GLEGKVESKE EVEQLHDSEV GSKDLTKNNV EEPEVEIESD
0201: SETDVEGHQG DKIEAQEKSD RDLDVSQDLK LNENVEKHPV DSDEVRESEL VSAKVSPTEP SDGGMDLGQP TVTDPAETIN GSESVNDHVG SEPVTVLEPV
0301: SVENGHPPVE SELERSSDVP FTSVAEKVNA SDGEVLPDSG TVDVVVSEVS SDVPAETQAL NAISLDSQPS GKDSVVENGN SKSESEDSKM QSEIGAVDDG
0401: SVSDGSINTH PESQDASDPT CDQGGKQHIS SEVKEVLDAP ASEEISDAVI VAKDNGSEAA ISDGLSCTNQ QGSESDEISG LVEKLPSHAL HEVVSSANDT
0501: SVIVSDDTKS QGLSEDHGVD TNQTIQDDCS AELEEVTDVN VKHAPNEKVQ GDNSEGNLNV GGDVCLNSAE EAKELPTGDL SGNASHESAE TLSTNIDEPL
0601: SLLDTKTAVS DFAESSAGVA GEIDAVAMES EAAQSIKQCA EAHVAPSIIE DGEIDREVNC GSEVNVTKTT PVAVREDIPP KEVSEMEESD VKERSSINTD
0701: EEVATASVAS EIKTCAQDLE SKVVTSTDTI HTGAKDCVDS QPAENKEGNV VDRTDDKVAS TGEVSVLDAS EGLTVAAEIE KRPFYFLPRV PRYDDEKLAE
0801: QLKHAEEQVD QKTQNRDALR ADIQKIRAIC KDYDISYKAV MAEERSARKA MHSKRQEIEA LQSMISRVKS AASVDDIDSR VRNMEHTMQH TTLSLNEEKG
0901: FMREIKQLKQ LREQISSSMG TKDEVKQALD EKEKTEERLK VLRKELDALR NDLSKAEEIT KAAKKKCDGE WEAQSKLQEQ FRAADAVRQE AFVHLQDLKK
1001: QQREKNKYFF KYRDNSRAAS EMALKKDRAA LQSLCSDQVE NFMNMWNNDD EFRKYYVKSN TRSTFRRLGT LDGRSLGPDE EPPRITYAPR TDKLRTSSDR
1101: AEKHEAVPAQ KEKVVKFEGS KVENNGKEVA KPTEQKSQTT KSKKAVKPDQ PPSIVTELVS GKEEIEKSAT PEEEEPPKLT KEEEELIKKE EEKRKQKEAA
1201: KMKEQHRLEE IAKAKEAMER KKKREEKAKA RAVLKAQKEA EEREKEREKK LRKKERRKGI FTSEETATEN PIPTAETVVE TPREIETPKK QTVEESQQMK
1301: KSHKPSSQFL KQNKSKSVPL PLRNRGSKRK LRQWMWIGLI VVIIIALFLL GNANLSSPAN LWFT
0101: SIADDDVLGV SQDSQTLEKS ELESTDDGPE EVVEIPKSEV EDSLEKSVDQ QHPGNGHLES GLEGKVESKE EVEQLHDSEV GSKDLTKNNV EEPEVEIESD
0201: SETDVEGHQG DKIEAQEKSD RDLDVSQDLK LNENVEKHPV DSDEVRESEL VSAKVSPTEP SDGGMDLGQP TVTDPAETIN GSESVNDHVG SEPVTVLEPV
0301: SVENGHPPVE SELERSSDVP FTSVAEKVNA SDGEVLPDSG TVDVVVSEVS SDVPAETQAL NAISLDSQPS GKDSVVENGN SKSESEDSKM QSEIGAVDDG
0401: SVSDGSINTH PESQDASDPT CDQGGKQHIS SEVKEVLDAP ASEEISDAVI VAKDNGSEAA ISDGLSCTNQ QGSESDEISG LVEKLPSHAL HEVVSSANDT
0501: SVIVSDDTKS QGLSEDHGVD TNQTIQDDCS AELEEVTDVN VKHAPNEKVQ GDNSEGNLNV GGDVCLNSAE EAKELPTGDL SGNASHESAE TLSTNIDEPL
0601: SLLDTKTAVS DFAESSAGVA GEIDAVAMES EAAQSIKQCA EAHVAPSIIE DGEIDREVNC GSEVNVTKTT PVAVREDIPP KEVSEMEESD VKERSSINTD
0701: EEVATASVAS EIKTCAQDLE SKVVTSTDTI HTGAKDCVDS QPAENKEGNV VDRTDDKVAS TGEVSVLDAS EGLTVAAEIE KRPFYFLPRV PRYDDEKLAE
0801: QLKHAEEQVD QKTQNRDALR ADIQKIRAIC KDYDISYKAV MAEERSARKA MHSKRQEIEA LQSMISRVKS AASVDDIDSR VRNMEHTMQH TTLSLNEEKG
0901: FMREIKQLKQ LREQISSSMG TKDEVKQALD EKEKTEERLK VLRKELDALR NDLSKAEEIT KAAKKKCDGE WEAQSKLQEQ FRAADAVRQE AFVHLQDLKK
1001: QQREKNKYFF KYRDNSRAAS EMALKKDRAA LQSLCSDQVE NFMNMWNNDD EFRKYYVKSN TRSTFRRLGT LDGRSLGPDE EPPRITYAPR TDKLRTSSDR
1101: AEKHEAVPAQ KEKVVKFEGS KVENNGKEVA KPTEQKSQTT KSKKAVKPDQ PPSIVTELVS GKEEIEKSAT PEEEEPPKLT KEEEELIKKE EEKRKQKEAA
1201: KMKEQHRLEE IAKAKEAMER KKKREEKAKA RAVLKAQKEA EEREKEREKK LRKKERRKGI FTSEETATEN PIPTAETVVE TPREIETPKK QTVEESQQMK
1301: KSHKPSSQFL KQNKSKSVPL PLRNRGSKRK LRQWMWIGLI VVIIIALFLL GNANLSSPAN LWFT
Arabidopsis Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: guard cell, cultured cell; BEST Arabidopsis thaliana protein match is: proton pump interactor 1 (TAIR:AT4G27500.1) /.../30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT1G20970]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.