Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04588 | Canola | nucleus | 57.62 | 57.46 |
| CDY29491 | Canola | nucleus | 57.92 | 57.25 |
| Bra025862.1-P | Field mustard | nucleus | 57.7 | 56.13 |
| KRH66595 | Soybean | nucleus | 3.59 | 39.84 |
| KRH00096 | Soybean | nucleus | 8.28 | 26.78 |
| KRH49503 | Soybean | endoplasmic reticulum | 23.09 | 24.31 |
| VIT_18s0122g00410.t01 | Wine grape | nucleus | 25.73 | 23.76 |
| KRG89178 | Soybean | endoplasmic reticulum, nucleus | 25.95 | 23.58 |
| AT4G27500.1 | Thale cress | nucleus | 10.04 | 22.39 |
| HORVU5Hr1G073990.1 | Barley | mitochondrion | 16.2 | 20.87 |
| Zm00001d027914_P001 | Maize | nucleus | 3.74 | 20.73 |
| Solyc05g008780.2.1 | Tomato | nucleus | 23.17 | 20.49 |
| Zm00001d015046_P002 | Maize | cytosol, extracellular, mitochondrion, nucleus | 3.37 | 20.44 |
| GSMUA_AchrUn_... | Banana | nucleus | 18.7 | 20.32 |
| GSMUA_Achr7P20610_001 | Banana | nucleus | 20.67 | 20.3 |
| AT3G15340.3 | Thale cress | nucleus | 8.65 | 20.03 |
| AT5G36780.1 | Thale cress | nucleus | 7.99 | 18.92 |
| AT5G36690.1 | Thale cress | nucleus | 7.99 | 18.92 |
| Zm00001d020965_P005 | Maize | nucleus | 18.48 | 18.75 |
| AT1G53110.1 | Thale cress | nucleus | 5.87 | 18.22 |
| TraesCS5A01G269500.1 | Wheat | golgi | 18.99 | 18.05 |
| OQU89707 | Sorghum | nucleus | 19.72 | 17.66 |
| TraesCS5D01G277600.3 | Wheat | nucleus | 18.18 | 17.51 |
| TraesCS5B01G270000.2 | Wheat | golgi | 18.48 | 17.21 |
| Zm00001d021166_P001 | Maize | cytosol | 4.11 | 16.42 |
| Zm00001d006041_P002 | Maize | nucleus | 17.52 | 15.15 |
Protein Annotations
| MapMan:35.1 | EntrezGene:838691 | ProteinID:AEE30049.1 | ArrayExpress:AT1G20970 | EnsemblPlantsGene:AT1G20970 | RefSeq:AT1G20970 |
| TAIR:AT1G20970 | RefSeq:AT1G20970-TAIR-G | EnsemblPlants:AT1G20970.1 | TAIR:AT1G20970.1 | Unigene:At.41677 | ncoils:Coil |
| UniProt:F4HWC3 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005886 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_173521.2 | PO:PO:0000005 | PO:PO:0000293 |
| PANTHER:PTHR32219 | PANTHER:PTHR32219:SF6 | TMHMM:TMhelix | UniParc:UPI0001738FCB | SEG:seg | : |
Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: guard cell, cultured cell; BEST Arabidopsis thaliana protein match is: proton pump interactor 1 (TAIR:AT4G27500.1) /.../30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT1G20970]
Coordinates
chr1:+:7313901..7319921
Molecular Weight (calculated)
150169.0 Da
IEP (calculated)
4.384
GRAVY (calculated)
-0.883
Length
1364 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPVEVERDQG EVSVKVDFEN ATEIKPEVVV SATKEDVVNG ISHGGSNNGN GNDTDGSYDF ITENDTVGDD FVESDYVKPV DDANVEKDLK EGENVKVDAP
0101: SIADDDVLGV SQDSQTLEKS ELESTDDGPE EVVEIPKSEV EDSLEKSVDQ QHPGNGHLES GLEGKVESKE EVEQLHDSEV GSKDLTKNNV EEPEVEIESD
0201: SETDVEGHQG DKIEAQEKSD RDLDVSQDLK LNENVEKHPV DSDEVRESEL VSAKVSPTEP SDGGMDLGQP TVTDPAETIN GSESVNDHVG SEPVTVLEPV
0301: SVENGHPPVE SELERSSDVP FTSVAEKVNA SDGEVLPDSG TVDVVVSEVS SDVPAETQAL NAISLDSQPS GKDSVVENGN SKSESEDSKM QSEIGAVDDG
0401: SVSDGSINTH PESQDASDPT CDQGGKQHIS SEVKEVLDAP ASEEISDAVI VAKDNGSEAA ISDGLSCTNQ QGSESDEISG LVEKLPSHAL HEVVSSANDT
0501: SVIVSDDTKS QGLSEDHGVD TNQTIQDDCS AELEEVTDVN VKHAPNEKVQ GDNSEGNLNV GGDVCLNSAE EAKELPTGDL SGNASHESAE TLSTNIDEPL
0601: SLLDTKTAVS DFAESSAGVA GEIDAVAMES EAAQSIKQCA EAHVAPSIIE DGEIDREVNC GSEVNVTKTT PVAVREDIPP KEVSEMEESD VKERSSINTD
0701: EEVATASVAS EIKTCAQDLE SKVVTSTDTI HTGAKDCVDS QPAENKEGNV VDRTDDKVAS TGEVSVLDAS EGLTVAAEIE KRPFYFLPRV PRYDDEKLAE
0801: QLKHAEEQVD QKTQNRDALR ADIQKIRAIC KDYDISYKAV MAEERSARKA MHSKRQEIEA LQSMISRVKS AASVDDIDSR VRNMEHTMQH TTLSLNEEKG
0901: FMREIKQLKQ LREQISSSMG TKDEVKQALD EKEKTEERLK VLRKELDALR NDLSKAEEIT KAAKKKCDGE WEAQSKLQEQ FRAADAVRQE AFVHLQDLKK
1001: QQREKNKYFF KYRDNSRAAS EMALKKDRAA LQSLCSDQVE NFMNMWNNDD EFRKYYVKSN TRSTFRRLGT LDGRSLGPDE EPPRITYAPR TDKLRTSSDR
1101: AEKHEAVPAQ KEKVVKFEGS KVENNGKEVA KPTEQKSQTT KSKKAVKPDQ PPSIVTELVS GKEEIEKSAT PEEEEPPKLT KEEEELIKKE EEKRKQKEAA
1201: KMKEQHRLEE IAKAKEAMER KKKREEKAKA RAVLKAQKEA EEREKEREKK LRKKERRKGI FTSEETATEN PIPTAETVVE TPREIETPKK QTVEESQQMK
1301: KSHKPSSQFL KQNKSKSVPL PLRNRGSKRK LRQWMWIGLI VVIIIALFLL GNANLSSPAN LWFT
0101: SIADDDVLGV SQDSQTLEKS ELESTDDGPE EVVEIPKSEV EDSLEKSVDQ QHPGNGHLES GLEGKVESKE EVEQLHDSEV GSKDLTKNNV EEPEVEIESD
0201: SETDVEGHQG DKIEAQEKSD RDLDVSQDLK LNENVEKHPV DSDEVRESEL VSAKVSPTEP SDGGMDLGQP TVTDPAETIN GSESVNDHVG SEPVTVLEPV
0301: SVENGHPPVE SELERSSDVP FTSVAEKVNA SDGEVLPDSG TVDVVVSEVS SDVPAETQAL NAISLDSQPS GKDSVVENGN SKSESEDSKM QSEIGAVDDG
0401: SVSDGSINTH PESQDASDPT CDQGGKQHIS SEVKEVLDAP ASEEISDAVI VAKDNGSEAA ISDGLSCTNQ QGSESDEISG LVEKLPSHAL HEVVSSANDT
0501: SVIVSDDTKS QGLSEDHGVD TNQTIQDDCS AELEEVTDVN VKHAPNEKVQ GDNSEGNLNV GGDVCLNSAE EAKELPTGDL SGNASHESAE TLSTNIDEPL
0601: SLLDTKTAVS DFAESSAGVA GEIDAVAMES EAAQSIKQCA EAHVAPSIIE DGEIDREVNC GSEVNVTKTT PVAVREDIPP KEVSEMEESD VKERSSINTD
0701: EEVATASVAS EIKTCAQDLE SKVVTSTDTI HTGAKDCVDS QPAENKEGNV VDRTDDKVAS TGEVSVLDAS EGLTVAAEIE KRPFYFLPRV PRYDDEKLAE
0801: QLKHAEEQVD QKTQNRDALR ADIQKIRAIC KDYDISYKAV MAEERSARKA MHSKRQEIEA LQSMISRVKS AASVDDIDSR VRNMEHTMQH TTLSLNEEKG
0901: FMREIKQLKQ LREQISSSMG TKDEVKQALD EKEKTEERLK VLRKELDALR NDLSKAEEIT KAAKKKCDGE WEAQSKLQEQ FRAADAVRQE AFVHLQDLKK
1001: QQREKNKYFF KYRDNSRAAS EMALKKDRAA LQSLCSDQVE NFMNMWNNDD EFRKYYVKSN TRSTFRRLGT LDGRSLGPDE EPPRITYAPR TDKLRTSSDR
1101: AEKHEAVPAQ KEKVVKFEGS KVENNGKEVA KPTEQKSQTT KSKKAVKPDQ PPSIVTELVS GKEEIEKSAT PEEEEPPKLT KEEEELIKKE EEKRKQKEAA
1201: KMKEQHRLEE IAKAKEAMER KKKREEKAKA RAVLKAQKEA EEREKEREKK LRKKERRKGI FTSEETATEN PIPTAETVVE TPREIETPKK QTVEESQQMK
1301: KSHKPSSQFL KQNKSKSVPL PLRNRGSKRK LRQWMWIGLI VVIIIALFLL GNANLSSPAN LWFT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.