Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001590.1-P | Field mustard | nucleus | 69.27 | 68.92 |
| CDX82440 | Canola | nucleus | 65.36 | 62.4 |
| AT5G36690.1 | Thale cress | nucleus | 59.93 | 61.28 |
| AT5G36780.1 | Thale cress | nucleus | 59.93 | 61.28 |
| CDX98546 | Canola | nucleus | 58.23 | 60.71 |
| CDX75821 | Canola | nucleus | 62.82 | 60.66 |
| Bra027261.1-P | Field mustard | nucleus | 57.56 | 59.89 |
| CDX97649 | Canola | nucleus | 50.93 | 54.25 |
| AT1G53110.1 | Thale cress | nucleus | 32.09 | 43.05 |
| AT4G27500.1 | Thale cress | nucleus | 34.47 | 33.17 |
| KRH22077 | Soybean | endoplasmic reticulum | 33.45 | 31.98 |
| KRH27251 | Soybean | endoplasmic reticulum, nucleus | 32.43 | 31.62 |
| Solyc07g063100.2.1 | Tomato | nucleus | 32.77 | 30.73 |
| PGSC0003DMT400032400 | Potato | nucleus | 32.26 | 30.21 |
| VIT_19s0014g02640.t01 | Wine grape | extracellular, nucleus | 28.86 | 30.04 |
| KRH55252 | Soybean | nucleus | 32.94 | 29.17 |
| EER96610 | Sorghum | nucleus | 29.2 | 27.88 |
| TraesCS5A01G186800.1 | Wheat | nucleus | 29.03 | 27.58 |
| Zm00001d005636_P001 | Maize | nucleus | 28.86 | 27.55 |
| TraesCS5B01G185200.2 | Wheat | nucleus | 28.69 | 26.83 |
| Os09t0346400-01 | Rice | golgi, plasma membrane | 28.52 | 26.79 |
| HORVU4Hr1G058930.1 | Barley | nucleus | 25.13 | 26.76 |
| HORVU5Hr1G041880.1 | Barley | nucleus | 28.18 | 26.69 |
| TraesCS5D01G192100.1 | Wheat | nucleus | 28.86 | 26.65 |
| Os08t0390000-02 | Rice | nucleus | 27.67 | 26.25 |
| Zm00001d020175_P002 | Maize | golgi, plasma membrane | 28.52 | 26.09 |
| HORVU2Hr1G081330.1 | Barley | cytosol, nucleus | 14.94 | 25.81 |
| EER96609 | Sorghum | cytosol | 13.92 | 25.71 |
| Solyc12g013860.1.1 | Tomato | unclear | 14.43 | 25.6 |
| HORVU0Hr1G030120.1 | Barley | nucleus, plastid | 28.18 | 24.67 |
| GSMUA_Achr6P21610_001 | Banana | cytosol | 17.83 | 24.59 |
| AT1G20970.1 | Thale cress | nucleus | 20.03 | 8.65 |
Protein Annotations
| MapMan:35.1 | EntrezGene:820765 | UniProt:A0A178VC28 | ProteinID:AEE75643.1 | ProteinID:AEE75644.1 | ProteinID:ANM64261.1 |
| ArrayExpress:AT3G15340 | EnsemblPlantsGene:AT3G15340 | RefSeq:AT3G15340 | TAIR:AT3G15340 | RefSeq:AT3G15340-TAIR-G | EnsemblPlants:AT3G15340.3 |
| Unigene:At.50184 | UniProt:B3H4K7 | ProteinID:BAB02163.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005886 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0010155 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_001118633.1 | RefSeq:NP_001326301.1 |
| RefSeq:NP_188152.3 | ProteinID:OAP02472.1 | InterPro:PPI | Symbol:PPI2 | PANTHER:PTHR32219 | PANTHER:PTHR32219:SF2 |
| TMHMM:TMhelix | UniParc:UPI00015057D4 | SEG:seg | : | : | : |
Description
PPI2PPI2 [Source:UniProtKB/TrEMBL;Acc:A0A178VC28]
Coordinates
chr3:-:5159698..5162642
Molecular Weight (calculated)
67327.4 Da
IEP (calculated)
6.810
GRAVY (calculated)
-0.816
Length
589 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAQIILSEG FEVVPPPEMN DLVLFGSNQS VSSCDVSTVT TEDGTVFSGD SSPGGATEED FPEEKPFSFY FVKQPAYDDP EIKAKIDEAG HEINRYNKDR
101: IVVSNAQESE KAEILSLFGQ MKSLVSKSEG YRVVIEEKKM EFDALHESLR NLRCSTSDQL CFSKEELDHL IYIAHYQIEH GSIGFEEEDW VLKETEKADG
201: IVLSEDSLAE KEASINRVKS MAVELNEVKK ELDAITWKIN HLSDKVGKSQ NNLRVLDVKK AHILEERDRS YERIKMLRIQ RDKGKAAFYQ SLPVMRKARE
301: LAASGNVRDL EVFASSEADR FMTQWNDDKA FRDDYVKRIS PSLCERQLNQ DGRIKDPEVQ VVWEKKVPVK GGEKVHETNR EDSSSNSSQY GSVITDKRKK
401: ETRKKAMDFN RSSAEESDVT DLEFSVYEKP KKEEEEVDEE TLKEREREEQ LEKARLAMER KRKLQEKAAA KAAIRAQKEA EKKLKECEKK AKKKAAANSS
501: SPSESDHSQE VTKDLEKVRT LAVSGKEKHQ KERSLFPKQR SFRYKHRGRG TEALPKAILN RRKAHKYWVW GLSSAALAVA LFLVVLLLR
101: IVVSNAQESE KAEILSLFGQ MKSLVSKSEG YRVVIEEKKM EFDALHESLR NLRCSTSDQL CFSKEELDHL IYIAHYQIEH GSIGFEEEDW VLKETEKADG
201: IVLSEDSLAE KEASINRVKS MAVELNEVKK ELDAITWKIN HLSDKVGKSQ NNLRVLDVKK AHILEERDRS YERIKMLRIQ RDKGKAAFYQ SLPVMRKARE
301: LAASGNVRDL EVFASSEADR FMTQWNDDKA FRDDYVKRIS PSLCERQLNQ DGRIKDPEVQ VVWEKKVPVK GGEKVHETNR EDSSSNSSQY GSVITDKRKK
401: ETRKKAMDFN RSSAEESDVT DLEFSVYEKP KKEEEEVDEE TLKEREREEQ LEKARLAMER KRKLQEKAAA KAAIRAQKEA EKKLKECEKK AKKKAAANSS
501: SPSESDHSQE VTKDLEKVRT LAVSGKEKHQ KERSLFPKQR SFRYKHRGRG TEALPKAILN RRKAHKYWVW GLSSAALAVA LFLVVLLLR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.