CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES11577

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27500.1	EES11577	AT2G18960.1	12182706
AT4G27500.1	EES11577	AT2G18960.1	16279950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005636_P001	Maize	nucleus	92.06	92.06
Zm00001d020175_P002	Maize	golgi, plasma membrane	93.19	89.29
Os09t0346400-01	Rice	golgi, plasma membrane	72.45	71.29
HORVU5Hr1G041880.1	Barley	nucleus	71.8	71.22
TraesCS5D01G192100.1	Wheat	nucleus	72.93	70.53
TraesCS5A01G186800.1	Wheat	nucleus	70.34	70.0
TraesCS5B01G185200.2	Wheat	nucleus	71.31	69.84
HORVU2Hr1G081330.1	Barley	cytosol, nucleus	38.57	69.79
HORVU4Hr1G058930.1	Barley	nucleus	61.1	68.17
HORVU0Hr1G030120.1	Barley	nucleus, plastid	71.8	65.82
EER96609	Sorghum	cytosol	33.87	65.52
GSMUA_Achr6P21610_001	Banana	cytosol	32.74	47.31
KRH27251	Soybean	endoplasmic reticulum, nucleus	43.76	44.7
VIT_19s0014g02640.t01	Wine grape	extracellular, nucleus	40.68	44.35
KRH22077	Soybean	endoplasmic reticulum	44.25	44.32
Bra019045.1-P	Field mustard	nucleus	42.3	43.14
CDY29843	Canola	nucleus	41.82	43.0
AT4G27500.1	Thale cress	nucleus	42.46	42.81
CDY56314	Canola	nucleus	31.28	41.51
CDX97389	Canola	nucleus	41.17	41.23
CDX89242	Canola	cytoskeleton, cytosol, nucleus	28.2	40.56
PGSC0003DMT400032400	Potato	nucleus	41.0	40.22
Solyc07g063100.2.1	Tomato	nucleus	40.68	39.97
KRH55252	Soybean	nucleus	42.3	39.25
Solyc12g013860.1.1	Tomato	unclear	21.07	39.16
CDY14276	Canola	nucleus	39.22	38.91
Bra026343.1-P	Field mustard	nucleus	38.9	37.85
CDY19058	Canola	endoplasmic reticulum, nucleus, plastid	35.33	35.8
Bra010401.1-P	Field mustard	nucleus	40.03	33.07
CDY56315	Canola	nucleus	5.67	33.02
CDY24116	Canola	nucleus	20.58	31.91
CDY26009	Canola	nucleus	20.42	31.5
Bra019016.1-P	Field mustard	nucleus	20.26	31.49
Bra001590.1-P	Field mustard	nucleus	29.01	30.24
AT1G53110.1	Thale cress	nucleus	20.91	29.39
AT3G15340.3	Thale cress	nucleus	27.88	29.2
AT5G36780.1	Thale cress	nucleus	26.74	28.65
AT5G36690.1	Thale cress	nucleus	26.74	28.65
CDX98546	Canola	nucleus	25.77	28.14
CDX97649	Canola	nucleus	24.96	27.85
Bra027261.1-P	Field mustard	nucleus	25.28	27.56
CDX75821	Canola	nucleus	27.23	27.54
CDX82440	Canola	nucleus	27.23	27.23
OQU89707	Sorghum	nucleus	22.53	9.13

Protein Annotations

MapMan:35.1	EntrezGene:8055551	UniProt:C5XAJ9	ncoils:Coil	EnsemblPlants:EER96610	ProteinID:EER96610
ProteinID:EER96610.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0010155	GO:GO:0016020	GO:GO:0016021
InterPro:PPI	PANTHER:PTHR32219	PANTHER:PTHR32219:SF2	EnsemblPlantsGene:SORBI_3002G177000	unigene:Sbi.18168	TMHMM:TMhelix
UniParc:UPI0001A83976	RefSeq:XP_002460089.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:55682136..55687557

Molecular Weight (calculated)

69011.1 Da

IEP (calculated)

9.437

GRAVY (calculated)

-0.822

Length

617 amino acids

Sequence
(BLAST)

001: MGMEVVGAEA APAEVKVSDG EVNLFQEKES KATAKEREEA VVFGSETTTN IADLAPPKDA KDEWPEPKQT YAFYFIKIRS FEDPKLRAKL EQADKEFQKK
101: IQARSKLIEA VRAKKAERSS IIAELKPLSA ENKQYNEVVN EKIKEMEPLR NSLGKFRDEN NAMRAQSAGL CSSIEELDLT IKMLNDRMVH ESIPLSEEKR
201: LVKEIKDLEK TRSKVISNAA NRAKLQGTVV EKEAIQDQVK IIGEGIDGIK KERQAVRSKI KVLEDELKLV DAEIASLQED LDAATARKDK AYESLSELRA
301: VRDAKNASAT QNRAVLGKAR DCSSRNMLAE LQELHKTEVD KFMTQWCESK AFREDYEKRI LASLNSRQLS RDGRMRNPDE KPIFIESQAP APEPEPIPVK
401: LPAKQTKEVP APQEDDAPKI EARSKGPVKS HKAKAALDAD DDYEAEPPKE KAKPTEADVA KLKEIKRQEE IEKNKLALER KKRQAEKQAA KAAARAQKEA
501: EKKLKKEEKK AKKKSGAADT DEPSESDAKS DEAIEAPAEQ EVILASTTVK KEQKESARHR NVVSRSKAPP PKAILKRKKA QSYWSWAGPA AIVAAVLVAL
601: LAVLGYYQYY LPANVSN

Best Arabidopsis Sequence Match ( AT4G27500.1 )
(BLAST)

001: MGVEVVNSGG FEVAPAPFEG KPEKNGKLDQ GKGDDAPINF GSVGELPKNA EENNNKVVNS DAPKNAAEEW PVAKQIHSFY LVKYRSYADP KIKAKLDLAD
101: KELEKLNKAR TGVLDKLRAK RAERSELFDL LDPLKSERKG FNTMFDEKRK EMEPLQQALG KLRSNDGGSA RGPAICSSEE ELNSMIYSYQ YRIQHESIPL
201: TEEKQILKEI RLLEGTRDKV IANAAMRAKI KESMGQKDDI QGQVKLMGAG LDGVKKERQA ISARINELSE KLKATKDEIT VLENELKTVS EKRDKAYSNI
301: HDLRRQRDET NSEYYQNRTV LNKARDLAAQ KNISELEALA NAEVEKFISL WCSKKNFRED YEKRILQSLD SRQLSRDGRM RNPDEKPLIA PEAAPSKATP
401: SETEVVPKAK AKPQPKEEPV SAPKPDATVA QNTEKAKDAV KVKNVADDDD DEVYGLGKPQ KEEKPVDAAT AKEMRKQEEI AKAKQAMERK KKLAEKAAAK
501: AAIRAQKEAE KKEKKEQEKK AKKKTGGNTE TETEEVPEAS EEEIEAPVQE EKPQKEKVFK EKPIRNRTRG RGPETIPRAI LKRKKSTNYW VYAAPAALVV
601: LLLLVLGYYY VL

Arabidopsis Description

PPI1Proton pump-interactor 1 [Source:UniProtKB/Swiss-Prot;Acc:O23144]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.