Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
TraesCS2A01G502400.1 | |
TraesCS2B01G530500.1 | |
TraesCS2D01G503000.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS5A01G186800.1 | Wheat | nucleus | 95.24 | 96.77 |
TraesCS5D01G192100.1 | Wheat | nucleus | 94.92 | 93.73 |
HORVU5Hr1G041880.1 | Barley | nucleus | 90.0 | 91.16 |
HORVU4Hr1G058930.1 | Barley | nucleus | 74.76 | 85.17 |
HORVU2Hr1G081330.1 | Barley | cytosol, nucleus | 46.03 | 85.04 |
HORVU0Hr1G030120.1 | Barley | nucleus, plastid | 90.0 | 84.25 |
EER96610 | Sorghum | nucleus | 69.84 | 71.31 |
Zm00001d005636_P001 | Maize | nucleus | 67.94 | 69.37 |
Zm00001d020175_P002 | Maize | golgi, plasma membrane | 70.0 | 68.48 |
Os09t0346400-01 | Rice | golgi, plasma membrane | 66.98 | 67.3 |
EER96609 | Sorghum | cytosol | 29.68 | 58.62 |
GSMUA_Achr6P21610_001 | Banana | cytosol | 30.63 | 45.2 |
CDY29843 | Canola | nucleus | 40.48 | 42.5 |
Bra019045.1-P | Field mustard | nucleus | 40.63 | 42.31 |
KRH27251 | Soybean | endoplasmic reticulum, nucleus | 40.16 | 41.89 |
CDY56314 | Canola | nucleus | 30.63 | 41.51 |
AT4G27500.1 | Thale cress | nucleus | 40.32 | 41.5 |
KRH22077 | Soybean | endoplasmic reticulum | 40.48 | 41.4 |
VIT_19s0014g02640.t01 | Wine grape | extracellular, nucleus | 37.14 | 41.34 |
CDX89242 | Canola | cytoskeleton, cytosol, nucleus | 27.78 | 40.79 |
CDX97389 | Canola | nucleus | 39.68 | 40.58 |
PGSC0003DMT400032400 | Potato | nucleus | 38.89 | 38.95 |
CDY14276 | Canola | nucleus | 38.1 | 38.59 |
Solyc07g063100.2.1 | Tomato | nucleus | 38.41 | 38.53 |
Bra026343.1-P | Field mustard | nucleus | 37.94 | 37.7 |
KRH55252 | Soybean | nucleus | 39.68 | 37.59 |
Solyc12g013860.1.1 | Tomato | unclear | 19.05 | 36.14 |
CDY56315 | Canola | nucleus | 6.03 | 35.85 |
CDY19058 | Canola | endoplasmic reticulum, nucleus, plastid | 34.13 | 35.3 |
Bra010401.1-P | Field mustard | nucleus | 38.25 | 32.26 |
CDY26009 | Canola | nucleus | 20.32 | 32.0 |
CDY24116 | Canola | nucleus | 20.16 | 31.91 |
Bra019016.1-P | Field mustard | nucleus | 19.84 | 31.49 |
Bra001590.1-P | Field mustard | nucleus | 27.62 | 29.39 |
AT1G53110.1 | Thale cress | nucleus | 20.32 | 29.16 |
AT3G15340.3 | Thale cress | nucleus | 26.83 | 28.69 |
AT5G36780.1 | Thale cress | nucleus | 24.92 | 27.26 |
AT5G36690.1 | Thale cress | nucleus | 24.92 | 27.26 |
CDX75821 | Canola | nucleus | 25.56 | 26.39 |
Bra027261.1-P | Field mustard | nucleus | 23.65 | 26.33 |
CDX82440 | Canola | nucleus | 25.71 | 26.26 |
CDX97649 | Canola | nucleus | 23.02 | 26.22 |
CDX98546 | Canola | nucleus | 23.49 | 26.19 |
TraesCS5B01G270000.2 | Wheat | golgi | 23.02 | 9.9 |
Protein Annotations
EnsemblPlants:TraesCS5B01G185200.2 | EnsemblPlantsGene:TraesCS5B01G185200 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
GO:GO:0005783 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0010155 | GO:GO:0016020 |
InterPro:PPI | ncoils:Coil | PANTHER:PTHR32219 | PANTHER:PTHR32219:SF2 | SEG:seg | TMHMM:TMhelix |
MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5B:+:336766347..336769261
Molecular Weight (calculated)
71086.3 Da
IEP (calculated)
9.566
GRAVY (calculated)
-0.906
Length
630 amino acids
Sequence
(BLAST)
(BLAST)
001: MGMEVVGAEA APAQVKVADE EVTLFQDKES QATAKEREEA AVFGSDNGKA AANDMAPPKD AAEEWPEPKQ TYTFYFVKVR SFEDPKLRAK LEQAEKDFQN
101: KIQARAKIID AIKAKKTERA AVLAELRPLS AENRQYNEAF NEKLEEMKPY RNRLGKFRDE NNAMRAESAG LCSSLEELEH EIKRLNHRIS HESISLDEEK
201: RLIKEIKTLE KTRPKVSSNA AKRAKMQDTV VERDAIQDQV KIPFCLSLPI QLIGDGIDGV KKERQAVRSK IKVLDDEMRV VDGEIALLQE DLNAATARKD
301: KAYESLTELR KARDLANASF HQNRIVLNRA RDYSSRNEVE ELQELHKTEV EKFMTQWCGS KTFREDYEKR ILTSLNGRQL TRDGRMRNPD EKPIFIETQQ
401: PAAPVQQEPI PSKAPLKQAK EAAAPQVAPK EEPLAKASAK SAKVKAAVDA DDDAYEAEPP KEKPKPKEVD VAKLKEIKRQ EEIEKNRLAL ERKKKQAEKQ
501: AAKAAARAQK EAEKKLKKEE KKTKKKTEAA DTDEPTDSDT KSDEAAETQA EDESTPVPVV NKEQKQNTRT RNVVTKTKAP LPKAILKRKK AQSYRSWATP
601: AMVISAVAVL VALLAALGYY QYYRPATTSN
101: KIQARAKIID AIKAKKTERA AVLAELRPLS AENRQYNEAF NEKLEEMKPY RNRLGKFRDE NNAMRAESAG LCSSLEELEH EIKRLNHRIS HESISLDEEK
201: RLIKEIKTLE KTRPKVSSNA AKRAKMQDTV VERDAIQDQV KIPFCLSLPI QLIGDGIDGV KKERQAVRSK IKVLDDEMRV VDGEIALLQE DLNAATARKD
301: KAYESLTELR KARDLANASF HQNRIVLNRA RDYSSRNEVE ELQELHKTEV EKFMTQWCGS KTFREDYEKR ILTSLNGRQL TRDGRMRNPD EKPIFIETQQ
401: PAAPVQQEPI PSKAPLKQAK EAAAPQVAPK EEPLAKASAK SAKVKAAVDA DDDAYEAEPP KEKPKPKEVD VAKLKEIKRQ EEIEKNRLAL ERKKKQAEKQ
501: AAKAAARAQK EAEKKLKKEE KKTKKKTEAA DTDEPTDSDT KSDEAAETQA EDESTPVPVV NKEQKQNTRT RNVVTKTKAP LPKAILKRKK AQSYRSWATP
601: AMVISAVAVL VALLAALGYY QYYRPATTSN
001: MGVEVVNSGG FEVAPAPFEG KPEKNGKLDQ GKGDDAPINF GSVGELPKNA EENNNKVVNS DAPKNAAEEW PVAKQIHSFY LVKYRSYADP KIKAKLDLAD
101: KELEKLNKAR TGVLDKLRAK RAERSELFDL LDPLKSERKG FNTMFDEKRK EMEPLQQALG KLRSNDGGSA RGPAICSSEE ELNSMIYSYQ YRIQHESIPL
201: TEEKQILKEI RLLEGTRDKV IANAAMRAKI KESMGQKDDI QGQVKLMGAG LDGVKKERQA ISARINELSE KLKATKDEIT VLENELKTVS EKRDKAYSNI
301: HDLRRQRDET NSEYYQNRTV LNKARDLAAQ KNISELEALA NAEVEKFISL WCSKKNFRED YEKRILQSLD SRQLSRDGRM RNPDEKPLIA PEAAPSKATP
401: SETEVVPKAK AKPQPKEEPV SAPKPDATVA QNTEKAKDAV KVKNVADDDD DEVYGLGKPQ KEEKPVDAAT AKEMRKQEEI AKAKQAMERK KKLAEKAAAK
501: AAIRAQKEAE KKEKKEITFS FLLYLNALCI LLSPF
101: KELEKLNKAR TGVLDKLRAK RAERSELFDL LDPLKSERKG FNTMFDEKRK EMEPLQQALG KLRSNDGGSA RGPAICSSEE ELNSMIYSYQ YRIQHESIPL
201: TEEKQILKEI RLLEGTRDKV IANAAMRAKI KESMGQKDDI QGQVKLMGAG LDGVKKERQA ISARINELSE KLKATKDEIT VLENELKTVS EKRDKAYSNI
301: HDLRRQRDET NSEYYQNRTV LNKARDLAAQ KNISELEALA NAEVEKFISL WCSKKNFRED YEKRILQSLD SRQLSRDGRM RNPDEKPLIA PEAAPSKATP
401: SETEVVPKAK AKPQPKEEPV SAPKPDATVA QNTEKAKDAV KVKNVADDDD DEVYGLGKPQ KEEKPVDAAT AKEMRKQEEI AKAKQAMERK KKLAEKAAAK
501: AAIRAQKEAE KKEKKEITFS FLLYLNALCI LLSPF
Arabidopsis Description
PPI1Proton pump-interactor 1 [Source:UniProtKB/Swiss-Prot;Acc:O23144]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.