CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82440	Canola	nucleus	90.98	89.95
Bra001590.1-P	Field mustard	nucleus	83.44	85.98
AT3G15340.3	Thale cress	nucleus	60.66	62.82
CDX98546	Canola	nucleus	54.92	59.29
CDX97649	Canola	nucleus	50.49	55.7
AT5G36690.1	Thale cress	nucleus	50.16	53.12
AT5G36780.1	Thale cress	nucleus	50.16	53.12
CDY26009	Canola	nucleus	28.03	42.75
CDY24116	Canola	nucleus	27.54	42.21
CDY29843	Canola	nucleus	31.97	32.5
KRH22077	Soybean	endoplasmic reticulum	30.82	30.52
Solyc07g063100.2.1	Tomato	nucleus	30.98	30.1
KRH27251	Soybean	endoplasmic reticulum, nucleus	29.67	29.97
CDY56314	Canola	nucleus	22.79	29.89
CDX89242	Canola	cytoskeleton, cytosol, nucleus	20.98	29.84
VIT_19s0014g02640.t01	Wine grape	extracellular, nucleus	27.54	29.68
CDX97389	Canola	nucleus	29.67	29.38
PGSC0003DMT400032400	Potato	nucleus	30.0	29.09
CDY14276	Canola	nucleus	29.51	28.94
GSMUA_Achr6P21610_001	Banana	cytosol	20.0	28.57
CDY19058	Canola	endoplasmic reticulum, nucleus, plastid	27.38	27.42
EER96610	Sorghum	nucleus	27.54	27.23
Zm00001d005636_P001	Maize	nucleus	27.05	26.74
HORVU2Hr1G081330.1	Barley	cytosol, nucleus	14.75	26.39
HORVU4Hr1G058930.1	Barley	nucleus	23.61	26.04
TraesCS5A01G186800.1	Wheat	nucleus	26.39	25.97
KRH55252	Soybean	nucleus	28.2	25.86
HORVU5Hr1G041880.1	Barley	nucleus	26.23	25.72
EER96609	Sorghum	cytosol	13.44	25.71
TraesCS5B01G185200.2	Wheat	nucleus	26.39	25.56
CDY56315	Canola	nucleus	4.43	25.47
Zm00001d020175_P002	Maize	golgi, plasma membrane	26.89	25.47
Os08t0390000-02	Rice	nucleus	25.9	25.44
TraesCS5D01G192100.1	Wheat	nucleus	26.56	25.39
Os09t0346400-01	Rice	golgi, plasma membrane	25.57	24.88
HORVU0Hr1G030120.1	Barley	nucleus, plastid	26.23	23.77
Solyc12g013860.1.1	Tomato	unclear	12.62	23.19
CDY04588	Canola	nucleus	17.38	7.75
CDY29491	Canola	nucleus	17.38	7.68

Protein Annotations

EnsemblPlants:CDX75821	EnsemblPlantsGene:GSBRNA2T00123780001	GO:A0A078CF67	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0010155
GO:GO:0016020	InterPro:PPI	ncoils:Coil	PANTHER:PTHR32219	PANTHER:PTHR32219:SF2	ProteinID:CDX75821
ProteinID:CDX75821.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EEB3B0	MapMan:35.1	:

Description

BnaC03g39040D

Coordinates

chrLK031805:-:931780..934903

Molecular Weight (calculated)

69509.7 Da

IEP (calculated)

7.857

GRAVY (calculated)

-0.643

Length

610 amino acids

Sequence
(BLAST)

001: MGAQIVLCDG FEVVSPPEMN DLILFGSDQS SGSNCGESTV TTEEDGTVFS GDSSPGGAAE DEWPEAKPFS FYFVKRPAYD DPEIKAKINE ADSQIYHCNK
101: LRIDISNAQK SERAEISSLY AQMESLGPKS EGYKMVFEEM KKEFDTLHEA LRNQRCSSSS QLSFSKEELN HLIYIAHYVI EHGNIGLEEE HWVLKETEKP
201: SEIVLSEDSL VEKEASIQRL KLMAVEMNEV KKELEAITWN INCSSDKLRQ IQNKIMMLDV EMAHILELRD RSYERIKMLR IQRDKGNAAC FQSLAVMRKA
301: KELAASGNVR DLEVLSSSEV DRFMTSWNND KAYRDDYVKR ISPSLYERQL SLDGRIRDQE GEVPVVQEKQ ALGKNREEGV VVMHKRNREE SSSNSSQDEN
401: VVTTKQKKEV RKTVIDFNRS SDEESQLEKA RLAMERKKKL QEKAAAKAAL RVQKEAEKKL KANYIIIECE KKAKKKAAAN SSFEVDQSQE VTNELEKVKT
501: SAVHRSLFRK QKSFRYKHRG RGTEALPKAI LNRRRAHQYW VWGVSSAALA LALSVGVLLL RFSVKRLATV SQELMAEMSP VMSFDKLPPS STASSPHLSK
601: RRYVHEIYHL

Best Arabidopsis Sequence Match ( AT3G15340.3 )
(BLAST)

001: MGAQIILSEG FEVVPPPEMN DLVLFGSNQS VSSCDVSTVT TEDGTVFSGD SSPGGATEED FPEEKPFSFY FVKQPAYDDP EIKAKIDEAG HEINRYNKDR
101: IVVSNAQESE KAEILSLFGQ MKSLVSKSEG YRVVIEEKKM EFDALHESLR NLRCSTSDQL CFSKEELDHL IYIAHYQIEH GSIGFEEEDW VLKETEKADG
201: IVLSEDSLAE KEASINRVKS MAVELNEVKK ELDAITWKIN HLSDKVGKSQ NNLRVLDVKK AHILEERDRS YERIKMLRIQ RDKGKAAFYQ SLPVMRKARE
301: LAASGNVRDL EVFASSEADR FMTQWNDDKA FRDDYVKRIS PSLCERQLNQ DGRIKDPEVQ VVWEKKVPVK GGEKVHETNR EDSSSNSSQY GSVITDKRKK
401: ETRKKAMDFN RSSAEESDVT DLEFSVYEKP KKEEEEVDEE TLKEREREEQ LEKARLAMER KRKLQEKAAA KAAIRAQKEA EKKLKECEKK AKKKAAANSS
501: SPSESDHSQE VTKDLEKVRT LAVSGKEKHQ KERSLFPKQR SFRYKHRGRG TEALPKAILN RRKAHKYWVW GLSSAALAVA LFLVVLLLR

Arabidopsis Description

PPI2PPI2 [Source:UniProtKB/TrEMBL;Acc:A0A178VC28]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.