CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX82608
CDY14177
CDY30294
CDY45897
CDY56511
CDY62140
CDY62141
CDY64741

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27500.1	CDX82608	AT2G18960.1	12182706
AT4G27500.1	CDY14177	AT2G18960.1	12182706
AT4G27500.1	CDY30294	AT2G18960.1	12182706
AT4G27500.1	CDY45897	AT2G18960.1	12182706
AT4G27500.1	CDY56511	AT2G18960.1	12182706
AT4G27500.1	CDY62140	AT2G18960.1	12182706
AT4G27500.1	CDY62141	AT2G18960.1	12182706
AT4G27500.1	CDY64741	AT2G18960.1	12182706
AT4G27500.1	CDX82608	AT2G18960.1	16279950
AT4G27500.1	CDY14177	AT2G18960.1	16279950
AT4G27500.1	CDY30294	AT2G18960.1	16279950
AT4G27500.1	CDY45897	AT2G18960.1	16279950
AT4G27500.1	CDY56511	AT2G18960.1	16279950
AT4G27500.1	CDY62140	AT2G18960.1	16279950
AT4G27500.1	CDY62141	AT2G18960.1	16279950
AT4G27500.1	CDY64741	AT2G18960.1	16279950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97389	Canola	nucleus	83.92	84.74
CDY56314	Canola	nucleus	53.54	71.61
CDY29843	Canola	nucleus	68.81	71.33
CDX89242	Canola	cytoskeleton, cytosol, nucleus	49.2	71.33
AT4G27500.1	Thale cress	nucleus	68.65	69.77
CDY19058	Canola	endoplasmic reticulum, nucleus, plastid	58.52	59.77
CDY56315	Canola	nucleus	8.36	49.06
VIT_19s0014g02640.t01	Wine grape	extracellular, nucleus	43.09	47.35
KRH27251	Soybean	endoplasmic reticulum, nucleus	45.66	47.02
KRH22077	Soybean	endoplasmic reticulum	46.14	46.59
Solyc07g063100.2.1	Tomato	nucleus	46.62	46.18
PGSC0003DMT400032400	Potato	nucleus	45.82	45.31
GSMUA_Achr6P21610_001	Banana	cytosol	29.1	42.39
KRH55252	Soybean	nucleus	44.86	41.95
HORVU2Hr1G081330.1	Barley	cytosol, nucleus	22.83	41.64
Solyc12g013860.1.1	Tomato	unclear	21.86	40.96
EER96609	Sorghum	cytosol	20.9	40.75
HORVU5Hr1G041880.1	Barley	nucleus	39.39	39.39
EER96610	Sorghum	nucleus	38.91	39.22
Zm00001d005636_P001	Maize	nucleus	38.75	39.06
TraesCS5A01G186800.1	Wheat	nucleus	38.42	38.55
TraesCS5D01G192100.1	Wheat	nucleus	39.23	38.24
HORVU4Hr1G058930.1	Barley	nucleus	33.92	38.16
TraesCS5B01G185200.2	Wheat	nucleus	38.59	38.1
Os08t0390000-02	Rice	nucleus	37.46	37.52
Zm00001d020175_P002	Maize	golgi, plasma membrane	38.75	37.42
HORVU0Hr1G030120.1	Barley	nucleus, plastid	39.39	36.4
Os09t0346400-01	Rice	golgi, plasma membrane	36.5	36.2
CDY24116	Canola	nucleus	22.35	34.92
CDY26009	Canola	nucleus	21.22	33.0
CDX98546	Canola	nucleus	28.62	31.5
CDX97649	Canola	nucleus	27.49	30.92
CDX75821	Canola	nucleus	28.94	29.51
CDX82440	Canola	nucleus	29.1	29.34
CDY04588	Canola	nucleus	23.47	10.67
CDY29491	Canola	nucleus	22.99	10.36

Protein Annotations

MapMan:35.1	GO:A0A078FMC9	UniProt:A0A078FMC9	EnsemblPlants:CDY14276	ProteinID:CDY14276	ProteinID:CDY14276.1
ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0010155	GO:GO:0016020	GO:GO:0016021
EnsemblPlantsGene:GSBRNA2T00078864001	InterPro:PPI	PANTHER:PTHR32219	PANTHER:PTHR32219:SF2	TMHMM:TMhelix	UniParc:UPI0004EE1340
SEG:seg	:	:	:	:	:

Description

BnaA08g14070DBnaA08g14070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FMC9]

Coordinates

chrLK032041:-:618563..621543

Molecular Weight (calculated)

70074.7 Da

IEP (calculated)

9.677

GRAVY (calculated)

-0.943

Length

622 amino acids

Sequence
(BLAST)

001: MGVEVVNFGG FEVAPAPFEA KPETKPETNG KVEQGKGEPP KKAEESSSSS SKISSDVPKD AAEEWPAAKQ IRSFYFVKYR HFDDPKIKAK LEVADKELEK
101: LNKARSVVIE GLRAKKAERS KLFDMLDPLK SERQGFNNKF DEKRKEMEPL QQALGKLRGN DGGSSRGPVI CSSQEELNSM IYSYEYRIQH ESIPLTEEKQ
201: LLKEIRLLEG TRDKVIANEA MRAKIKEAMG HKDDIQGQVK LMGAGLDGVK KERQAISARI NELSEKVKAT KDEIQVLENE LKTVTEKRDK AYSNIRELKK
301: QSAETNSGFY QGRNVLNKAR ELAAQRNVDE LEALSNAEVE KFVSLWCSKK NFREDYEKRL LGSLDARQMS RDGRMRNPEE KPLVAREAPQ AKAAPSVTEV
401: VPKANKAKQQ QPKEEEVSAP KPDAAAPVAQ KAEKAKDAEK GKKNVVVVDD DEEEEEVYGL GKSQKEEEEV DEATVKEMRK QEEIAKAKLA MERKKKLAEK
501: AAAKAAIRAK KEAEKKEQKE REKAAKKKTG GSNAYEAISE EVPEASEAEK EEIEAPVEEK PKKEKKVLKE KPIRNRIRNR GGPETLPRPI LKRKKQTNYM
601: VWAAPAAVVV LMLLVLGYYY VL

Best Arabidopsis Sequence Match ( AT4G27500.1 )
(BLAST)

001: MGVEVVNSGG FEVAPAPFEG KPEKNGKLDQ GKGDDAPINF GSVGELPKNA EENNNKVVNS DAPKNAAEEW PVAKQIHSFY LVKYRSYADP KIKAKLDLAD
101: KELEKLNKAR TGVLDKLRAK RAERSELFDL LDPLKSERKG FNTMFDEKRK EMEPLQQALG KLRSNDGGSA RGPAICSSEE ELNSMIYSYQ YRIQHESIPL
201: TEEKQILKEI RLLEGTRDKV IANAAMRAKI KESMGQKDDI QGQVKLMGAG LDGVKKERQA ISARINELSE KLKATKDEIT VLENELKTVS EKRDKAYSNI
301: HDLRRQRDET NSEYYQNRTV LNKARDLAAQ KNISELEALA NAEVEKFISL WCSKKNFRED YEKRILQSLD SRQLSRDGRM RNPDEKPLIA PEAAPSKATP
401: SETEVVPKAK AKPQPKEEPV SAPKPDATVA QNTEKAKDAV KVKNVADDDD DEVYGLGKPQ KEEKPVDAAT AKEMRKQEEI AKAKQAMERK KKLAEKAAAK
501: AAIRAQKEAE KKEKKEQEKK AKKKTGGNTE TETEEVPEAS EEEIEAPVQE EKPQKEKVFK EKPIRNRTRG RGPETIPRAI LKRKKSTNYW VYAAPAALVV
601: LLLLVLGYYY VL

Arabidopsis Description

PPI1Proton pump-interactor 1 [Source:UniProtKB/Swiss-Prot;Acc:O23144]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.