CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027261.1-P	Field mustard	nucleus	88.43	86.4
CDX98546	Canola	nucleus	84.45	82.65
CDX82440	Canola	nucleus	57.69	51.7
AT3G15340.3	Thale cress	nucleus	54.25	50.93
CDX75821	Canola	nucleus	55.7	50.49
AT5G36690.1	Thale cress	nucleus	49.37	47.4
AT5G36780.1	Thale cress	nucleus	49.37	47.4
CDY26009	Canola	nucleus	31.1	43.0
CDY24116	Canola	nucleus	30.56	42.46
KRH22077	Soybean	endoplasmic reticulum	33.63	30.19
KRH27251	Soybean	endoplasmic reticulum, nucleus	32.73	29.97
CDY29843	Canola	nucleus	31.28	28.83
CDX89242	Canola	cytoskeleton, cytosol, nucleus	22.24	28.67
VIT_19s0014g02640.t01	Wine grape	extracellular, nucleus	28.93	28.27
CDX97389	Canola	nucleus	31.1	27.92
Solyc07g063100.2.1	Tomato	nucleus	31.28	27.55
CDY14276	Canola	nucleus	30.92	27.49
PGSC0003DMT400032400	Potato	nucleus	30.74	27.03
CDY56314	Canola	nucleus	22.42	26.67
KRH55252	Soybean	nucleus	30.56	25.41
CDY19058	Canola	endoplasmic reticulum, nucleus, plastid	27.85	25.29
EER96610	Sorghum	nucleus	27.85	24.96
GSMUA_Achr6P21610_001	Banana	cytosol	19.17	24.82
Zm00001d005636_P001	Maize	nucleus	27.67	24.8
EER96609	Sorghum	cytosol	13.92	24.14
Os08t0390000-02	Rice	nucleus	26.76	23.83
Zm00001d020175_P002	Maize	golgi, plasma membrane	27.67	23.76
Os09t0346400-01	Rice	golgi, plasma membrane	26.76	23.6
HORVU5Hr1G041880.1	Barley	nucleus	26.4	23.47
TraesCS5A01G186800.1	Wheat	nucleus	26.22	23.39
TraesCS5B01G185200.2	Wheat	nucleus	26.22	23.02
TraesCS5D01G192100.1	Wheat	nucleus	26.4	22.88
HORVU4Hr1G058930.1	Barley	nucleus	22.6	22.6
CDY56315	Canola	nucleus	4.16	21.7
HORVU0Hr1G030120.1	Barley	nucleus, plastid	26.4	21.69
HORVU2Hr1G081330.1	Barley	cytosol, nucleus	13.2	21.41
Solyc12g013860.1.1	Tomato	unclear	11.75	19.58
CDY29491	Canola	nucleus	19.71	7.9
CDY04588	Canola	nucleus	19.53	7.89

Protein Annotations

EnsemblPlants:CDX97649	EnsemblPlantsGene:GSBRNA2T00104881001	GO:A0A078EA87	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0010155
GO:GO:0016020	InterPro:PPI	ncoils:Coil	PANTHER:PTHR32219	PANTHER:PTHR32219:SF2	ProteinID:CDX97649
ProteinID:CDX97649.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EEF593	MapMan:35.1	:

Description

BnaA05g24300D

Coordinates

chrLK031900:-:787323..789694

Molecular Weight (calculated)

63180.4 Da

IEP (calculated)

9.586

GRAVY (calculated)

-0.658

Length

553 amino acids

Sequence
(BLAST)

001: MGAQIIYCDG FEVVPPPPEM NDLIFFGSDQ SGGGGSNCGE STVTTEEDAT VFSGDSSPGW RETKLFSFYF VKQPAYDDHD IKSKIDAADF EIYHWNKRRI
101: DIYSAQKSQR AELLSLYALM ESLVAKSHGR KVVLEDKKVE FDSLQERLRC SSSDELDHLI YTEDWMLQGT EKPGGMALSD DSLAQKEASV HSLKLMAVEM
201: NEVKKELEAI AWNIQQLSDK IGQTQNKVMV LEAEMSYILE QRDKAYEKIK MLRIERDKGN AAFYHSIAVM KRAKELAASG NVRDLEVYSS SEVDRFMARW
301: NNDKAYREDY VKRISHSLCE RQLSRDGRIR DTEGEAQAVW EKLVKTRKEG MAVHKTNRED SSSNSSQDGN VITEKQKKEV RKKAMEFNRS SAEEKTVKEK
401: KREEQLEKAQ LAMERKRKLQ EKATAKAAIR AQKEAEKKLK ASYLLMLFVS LSLSYSLECE KKAKKKAASN SSLIKSQEAI NELEKVSTIA VSGKEKQRSV
501: FPKRSFRYKH RARGTEALPK AILNRRKAQR YWVWGLSSAA LALVLFLVFL LLR

Best Arabidopsis Sequence Match ( AT3G15340.3 )
(BLAST)

001: MGAQIILSEG FEVVPPPEMN DLVLFGSNQS VSSCDVSTVT TEDGTVFSGD SSPGGATEED FPEEKPFSFY FVKQPAYDDP EIKAKIDEAG HEINRYNKDR
101: IVVSNAQESE KAEILSLFGQ MKSLVSKSEG YRVVIEEKKM EFDALHESLR NLRCSTSDQL CFSKEELDHL IYIAHYQIEH GSIGFEEEDW VLKETEKADG
201: IVLSEDSLAE KEASINRVKS MAVELNEVKK ELDAITWKIN HLSDKVGKSQ NNLRVLDVKK AHILEERDRS YERIKMLRIQ RDKGKAAFYQ SLPVMRKARE
301: LAASGNVRDL EVFASSEADR FMTQWNDDKA FRDDYVKRIS PSLCERQLNQ DGRIKDPEVQ VVWEKKVPVK GGEKVHETNR EDSSSNSSQY GSVITDKRKK
401: ETRKKAMDFN RSSAEESDVT DLEFSVYEKP KKEEEEVDEE TLKEREREEQ LEKARLAMER KRKLQEKAAA KAAIRAQKEA EKKLKECEKK AKKKAAANSS
501: SPSESDHSQE VTKDLEKVRT LAVSGKEKHQ KERSLFPKQR SFRYKHRGRG TEALPKAILN RRKAHKYWVW GLSSAALAVA LFLVVLLLR

Arabidopsis Description

PPI2PPI2 [Source:UniProtKB/TrEMBL;Acc:A0A178VC28]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.