CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, nucleus

Predictor Summary:

nucleus 2
plastid 1
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, nucleus, plastid
Any Predictor:	endoplasmic reticulum, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX82608
CDY14177
CDY30294
CDY45897
CDY56511
CDY62140
CDY62141
CDY64741

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27500.1	CDX82608	AT2G18960.1	12182706
AT4G27500.1	CDY14177	AT2G18960.1	12182706
AT4G27500.1	CDY30294	AT2G18960.1	12182706
AT4G27500.1	CDY45897	AT2G18960.1	12182706
AT4G27500.1	CDY56511	AT2G18960.1	12182706
AT4G27500.1	CDY62140	AT2G18960.1	12182706
AT4G27500.1	CDY62141	AT2G18960.1	12182706
AT4G27500.1	CDY64741	AT2G18960.1	12182706
AT4G27500.1	CDX82608	AT2G18960.1	16279950
AT4G27500.1	CDY14177	AT2G18960.1	16279950
AT4G27500.1	CDY30294	AT2G18960.1	16279950
AT4G27500.1	CDY45897	AT2G18960.1	16279950
AT4G27500.1	CDY56511	AT2G18960.1	16279950
AT4G27500.1	CDY62140	AT2G18960.1	16279950
AT4G27500.1	CDY62141	AT2G18960.1	16279950
AT4G27500.1	CDY64741	AT2G18960.1	16279950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89242	Canola	cytoskeleton, cytosol, nucleus	54.84	77.86
CDY56314	Canola	nucleus	51.07	66.88
AT4G27500.1	Thale cress	nucleus	64.37	64.05
CDY29843	Canola	nucleus	62.56	63.5
CDX97389	Canola	nucleus	61.41	60.71
CDY14276	Canola	nucleus	59.77	58.52
KRH27251	Soybean	endoplasmic reticulum, nucleus	44.5	44.87
KRH22077	Soybean	endoplasmic reticulum	44.5	43.99
Solyc12g013860.1.1	Tomato	unclear	23.15	42.47
GSMUA_Achr6P21610_001	Banana	cytosol	29.56	42.15
VIT_19s0014g02640.t01	Wine grape	extracellular, nucleus	39.08	42.05
Solyc07g063100.2.1	Tomato	nucleus	41.87	40.61
PGSC0003DMT400032400	Potato	nucleus	41.54	40.22
HORVU2Hr1G081330.1	Barley	cytosol, nucleus	21.84	39.0
KRH55252	Soybean	nucleus	42.53	38.95
EER96609	Sorghum	cytosol	19.87	37.93
HORVU4Hr1G058930.1	Barley	nucleus	33.33	36.71
Zm00001d005636_P001	Maize	nucleus	35.96	35.49
EER96610	Sorghum	nucleus	35.8	35.33
HORVU5Hr1G041880.1	Barley	nucleus	35.96	35.21
TraesCS5A01G186800.1	Wheat	nucleus	35.47	34.84
Os08t0390000-02	Rice	nucleus	35.14	34.46
TraesCS5D01G192100.1	Wheat	nucleus	35.8	34.17
TraesCS5B01G185200.2	Wheat	nucleus	35.3	34.13
Zm00001d020175_P002	Maize	golgi, plasma membrane	35.96	34.01
Os09t0346400-01	Rice	golgi, plasma membrane	34.65	33.65
HORVU0Hr1G030120.1	Barley	nucleus, plastid	35.96	32.54
CDY24116	Canola	nucleus	19.38	29.65
CDY26009	Canola	nucleus	19.05	29.0
CDX98546	Canola	nucleus	26.27	28.32
CDY56315	Canola	nucleus	4.93	28.3
CDX97649	Canola	nucleus	25.29	27.85
CDX75821	Canola	nucleus	27.42	27.38
CDX82440	Canola	nucleus	27.42	27.07
CDY04588	Canola	nucleus	20.53	9.14
CDY29491	Canola	nucleus	20.53	9.06

Protein Annotations

EnsemblPlants:CDY19058	EnsemblPlantsGene:GSBRNA2T00006327001	GO:A0A078G341	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0010155
GO:GO:0016020	InterPro:PPI	ncoils:Coil	PANTHER:PTHR32219	PANTHER:PTHR32219:SF2	ProteinID:CDY19058
ProteinID:CDY19058.1	SEG:seg	UniParc:UPI0004EDBF47	UniProt:A0A078G341	MapMan:35.1	:

Description

BnaC01g20100DBnaC01g20100D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078G341]

Coordinates

chrLK032091:-:709986..713996

Molecular Weight (calculated)

68797.1 Da

IEP (calculated)

9.751

GRAVY (calculated)

-0.836

Length

609 amino acids

Sequence
(BLAST)

001: GEAKEIVQTE EGAVNEAKGS SSSSSPVIFL RSSFSRYTSV SVLFLMKSLF YTSVDLRLFR LLSRDKVSIK FGSLGEPPKK AQENNNNNNN NNNNVLISDV
101: PKDAAEEWPA GKQIHSFYFV KHPELEKLNK ARAAVFDQLK AKRFLFDALA ERSELFDLLD PLKAERQGFN TKFEEKRKEM EPLQQALGKL RGNDGGSARG
201: PAICSSEEEL NNMIYSYQYR IQHESIPLTE EKQLLKEIRL LEGTRDKVIA NEAVRAKIKE SMGQKDDIQG QVKLMGAGLD GVKKERQAVS ARINQLSEKV
301: KATKDEIQVL ENELKTASEK RDKVYSNIRE IRKQRDEMNS GFYQGRNVLN KARDLAAQKN IDELEALANA EVEKFVSLWC SKKNFREDYE KRILASLDAR
401: QLSRDGRMRN PEEKALVTPE APPVAKVPKA MAKQQPEEEP VSAPESDAAH VAQKTEKAKN ALKVKNAVVD DDEDELYGLG KPQKEEEKKI DEATVREMRK
501: QEEIAKAKLA MERKKKQAEK AAAKAAKRAQ MEAGKREKKA ISVLSLCSLP LAPRSEEVPD AEKEEIEAEV EEKPQKEKAV KEKPIRNRIR SRGGPETLPR
601: AILKRKIVN

Best Arabidopsis Sequence Match ( AT4G27500.1 )
(BLAST)

001: MGVEVVNSGG FEVAPAPFEG KPEKNGKLDQ GKGDDAPINF GSVGELPKNA EENNNKVVNS DAPKNAAEEW PVAKQIHSFY LVKYRSYADP KIKAKLDLAD
101: KELEKLNKAR TGVLDKLRAK RAERSELFDL LDPLKSERKG FNTMFDEKRK EMEPLQQALG KLRSNDGGSA RGPAICSSEE ELNSMIYSYQ YRIQHESIPL
201: TEEKQILKEI RLLEGTRDKV IANAAMRAKI KESMGQKDDI QGQVKLMGAG LDGVKKERQA ISARINELSE KLKATKDEIT VLENELKTVS EKRDKAYSNI
301: HDLRRQRDET NSEYYQNRTV LNKARDLAAQ KNISELEALA NAEVEKFISL WCSKKNFRED YEKRILQSLD SRQLSRDGRM RNPDEKPLIA PEAAPSKATP
401: SETEVVPKAK AKPQPKEEPV SAPKPDATVA QNTEKAKDAV KVKNVADDDD DEVYGLGKPQ KEEKPVDAAT AKEMRKQEEI AKAKQAMERK KKLAEKAAAK
501: AAIRAQKEAE KKEKKEQEKK AKKKTGGNTE TETEEVPEAS EEEIEAPVQE EKPQKEKVFK EKPIRNRTRG RGPETIPRAI LKRKKSTNYW VYAAPAALVV
601: LLLLVLGYYY VL

Arabidopsis Description

PPI1Proton pump-interactor 1 [Source:UniProtKB/Swiss-Prot;Acc:O23144]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.