CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, cytoskeleton

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, nucleus
Any Predictor:	cytoskeleton, cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX82608
CDY14177
CDY30294
CDY45897
CDY56511
CDY62140
CDY62141
CDY64741

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27500.1	CDX82608	AT2G18960.1	12182706
AT4G27500.1	CDY14177	AT2G18960.1	12182706
AT4G27500.1	CDY30294	AT2G18960.1	12182706
AT4G27500.1	CDY45897	AT2G18960.1	12182706
AT4G27500.1	CDY56511	AT2G18960.1	12182706
AT4G27500.1	CDY62140	AT2G18960.1	12182706
AT4G27500.1	CDY62141	AT2G18960.1	12182706
AT4G27500.1	CDY64741	AT2G18960.1	12182706
AT4G27500.1	CDX82608	AT2G18960.1	16279950
AT4G27500.1	CDY14177	AT2G18960.1	16279950
AT4G27500.1	CDY30294	AT2G18960.1	16279950
AT4G27500.1	CDY45897	AT2G18960.1	16279950
AT4G27500.1	CDY56511	AT2G18960.1	16279950
AT4G27500.1	CDY62140	AT2G18960.1	16279950
AT4G27500.1	CDY62141	AT2G18960.1	16279950
AT4G27500.1	CDY64741	AT2G18960.1	16279950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56314	Canola	nucleus	73.89	68.17
Bra026343.1-P	Field mustard	nucleus	88.81	60.09
CDY19058	Canola	endoplasmic reticulum, nucleus, plastid	77.86	54.84
CDY29843	Canola	nucleus	74.13	53.0
AT4G27500.1	Thale cress	nucleus	74.13	51.96
CDY14276	Canola	nucleus	71.33	49.2
CDX97389	Canola	nucleus	70.16	48.86
Solyc12g013860.1.1	Tomato	unclear	33.8	43.67
GSMUA_Achr6P21610_001	Banana	cytosol	42.66	42.86
HORVU2Hr1G081330.1	Barley	cytosol, nucleus	32.63	41.06
VIT_19s0014g02640.t01	Wine grape	extracellular, nucleus	51.75	39.22
EER96609	Sorghum	cytosol	29.14	39.19
KRH22077	Soybean	endoplasmic reticulum	50.12	34.9
KRH27251	Soybean	endoplasmic reticulum, nucleus	48.95	34.77
KRH55252	Soybean	nucleus	50.35	32.48
PGSC0003DMT400032400	Potato	nucleus	47.55	32.43
Solyc07g063100.2.1	Tomato	nucleus	47.32	32.32
HORVU4Hr1G058930.1	Barley	nucleus	38.23	29.66
TraesCS5A01G186800.1	Wheat	nucleus	41.03	28.39
HORVU5Hr1G041880.1	Barley	nucleus	41.03	28.3
EER96610	Sorghum	nucleus	40.56	28.2
Zm00001d005636_P001	Maize	nucleus	40.56	28.2
Os09t0346400-01	Rice	golgi, plasma membrane	41.03	28.07
TraesCS5B01G185200.2	Wheat	nucleus	40.79	27.78
TraesCS5D01G192100.1	Wheat	nucleus	41.03	27.59
Zm00001d020175_P002	Maize	golgi, plasma membrane	39.86	26.55
HORVU0Hr1G030120.1	Barley	nucleus, plastid	41.03	26.15
Os08t0390000-02	Rice	nucleus	37.53	25.93
CDX97649	Canola	nucleus	28.67	22.24
CDX98546	Canola	nucleus	29.14	22.12
CDX82440	Canola	nucleus	30.54	21.23
CDX75821	Canola	nucleus	29.84	20.98
CDY24116	Canola	nucleus	18.65	20.1
CDY26009	Canola	nucleus	18.41	19.75
CDY56315	Canola	nucleus	3.5	14.15
CDY04588	Canola	nucleus	19.11	5.99
CDY29491	Canola	nucleus	18.65	5.8

Protein Annotations

MapMan:35.1	GO:A0A078DJZ6	EnsemblPlants:CDX89242	ProteinID:CDX89242	ProteinID:CDX89242.1	ncoils:Coil
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005886
GO:GO:0006810	GO:GO:0008150	GO:GO:0010155	GO:GO:0016020	EnsemblPlantsGene:GSBRNA2T00149442001	InterPro:PPI
PANTHER:PTHR32219	PANTHER:PTHR32219:SF2	UniParc:UPI0004EE91D8	SEG:seg	:	:

Description

BnaA01g16510D

Coordinates

chrLK031858:-:404882..406505

Molecular Weight (calculated)

49164.7 Da

IEP (calculated)

9.032

GRAVY (calculated)

-0.776

Length

429 amino acids

Sequence
(BLAST)

001: MGVEVLHSGG FEVVPAPFED TNGKMDQGKG DKVSIKFGSL GEPPKKSLEN NVLISDVPKD AAEEWPAEKQ IHSFYFVKHR HFDDPKIKAK LDLAEKELEK
101: FNKARAAVFD QLKAKRAERS ELFDLLDPLK TERQGFNAKF DEKRKEMEPL QQALGKLRGN DGGSGRGPAI CSSEEELNNM IYSYQYRIQH ESIPLTEEKQ
201: LLKEIRMLEG TRDKVIANEA VRAKIKESMG QKDDIQGQVK LMGAGLDGVK KERQAVSARI NQLSEKVKAT KDEIQVLENE LKTVSEKRDK VYSNIREIRK
301: QHDYFCAWFY QGRNVLSKAR DLAAQKNIDE LEALANAEVE RFVSLWCSKK NFREDYEKRI LASLDARQLS RDGRMRNPEE KALVTPEAPP VAKVPKAKCC
401: RHRGVTHELV EWWNQGFNLR TREPIFMSF

Best Arabidopsis Sequence Match ( AT4G27500.1 )
(BLAST)

001: MGVEVVNSGG FEVAPAPFEG KPEKNGKLDQ GKGDDAPINF GSVGELPKNA EENNNKVVNS DAPKNAAEEW PVAKQIHSFY LVKYRSYADP KIKAKLDLAD
101: KELEKLNKAR TGVLDKLRAK RAERSELFDL LDPLKSERKG FNTMFDEKRK EMEPLQQALG KLRSNDGGSA RGPAICSSEE ELNSMIYSYQ YRIQHESIPL
201: TEEKQILKEI RLLEGTRDKV IANAAMRAKI KESMGQKDDI QGQVKLMGAG LDGVKKERQA ISARINELSE KLKATKDEIT VLENELKTVS EKRDKAYSNI
301: HDLRRQRDET NSEYYQNRTV LNKARDLAAQ KNISELEALA NAEVEKFISL WCSKKNFRED YEKRILQSLD SRQLSRDGRM RNPDEKPLIA PEAAPSKATP
401: SETEVVPKAK AKPQPKEEPV SAPKPDATVA QNTEKAKDAV KVKNVADDDD DEVYGLGKPQ KEEKPVDAAT AKEMRKQEEI AKAKQAMERK KKLAEKAAAK
501: AAIRAQKEAE KKEKKEQEKK AKKKTGGNTE TETEEVPEAS EEEIEAPVQE EKPQKEKVFK EKPIRNRTRG RGPETIPRAI LKRKKSTNYW VYAAPAALVV
601: LLLLVLGYYY VL

Arabidopsis Description

PPI1Proton pump-interactor 1 [Source:UniProtKB/Swiss-Prot;Acc:O23144]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.