CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
peroxisome 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX82608
CDX89242
CDX97389
CDY14177
CDY14276
CDY19058
CDY29843
CDY30294
CDY45897
CDY56314
CDY56315
CDY56511
CDY62140
CDY62141
CDY64741

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18960.1	CDX82608	AT2G18960.1	12182706
AT2G18960.1	CDY14177	AT2G18960.1	12182706
AT2G18960.1	CDY30294	AT2G18960.1	12182706
AT2G18960.1	CDY45897	AT2G18960.1	12182706
AT2G18960.1	CDY56511	AT2G18960.1	12182706
AT2G18960.1	CDY62140	AT2G18960.1	12182706
AT2G18960.1	CDY62141	AT2G18960.1	12182706
AT2G18960.1	CDY64741	AT2G18960.1	12182706
AT2G18960.1	CDX89242	AT4G27500.1	12182706
AT2G18960.1	CDX97389	AT4G27500.1	12182706
AT2G18960.1	CDY14276	AT4G27500.1	12182706
AT2G18960.1	CDY19058	AT4G27500.1	12182706
AT2G18960.1	CDY29843	AT4G27500.1	12182706
AT2G18960.1	CDY56314	AT4G27500.1	12182706
AT2G18960.1	CDY56315	AT4G27500.1	12182706
AT2G18960.1	CDX89242	AT4G27500.1	16279950
AT2G18960.1	CDX97389	AT4G27500.1	16279950
AT2G18960.1	CDY14276	AT4G27500.1	16279950
AT2G18960.1	CDY19058	AT4G27500.1	16279950
AT2G18960.1	CDY29843	AT4G27500.1	16279950
AT2G18960.1	CDY56314	AT4G27500.1	16279950
AT2G18960.1	CDY56315	AT4G27500.1	16279950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69631	Canola	cytosol, peroxisome, plasma membrane	58.16	76.14
CDY67606	Canola	peroxisome	55.69	75.35
CDY56511	Canola	peroxisome	96.94	74.14
Bra024452.1-P	Field mustard	cytosol, peroxisome, plasma membrane	93.0	67.23
CDY67153	Canola	peroxisome	85.42	63.83
CDX82608	Canola	peroxisome	88.05	63.65
CDY30294	Canola	peroxisome	87.9	63.54
CDY64741	Canola	peroxisome	87.9	63.54
CDX72217	Canola	peroxisome	84.26	63.52
CDY51650	Canola	plasma membrane	84.26	63.52
CDX72218	Canola	peroxisome	84.11	63.34
AT2G18960.1	Thale cress	peroxisome	87.46	63.22
CDY51651	Canola	plasma membrane	82.51	62.96
CDY14186	Canola	plasma membrane	84.84	61.98
CDY28167	Canola	peroxisome	85.42	61.81
PGSC0003DMT400010497	Potato	cytosol, peroxisome, plasma membrane	81.92	59.03
CDY47940	Canola	peroxisome	81.78	58.99
CDY42259	Canola	peroxisome	81.78	58.99
CDY38294	Canola	peroxisome	81.78	58.93
CDY25913	Canola	peroxisome	81.78	58.93
EES11577	Sorghum	cytosol, peroxisome, plasma membrane	80.17	57.83
Os04t0656100-01	Rice	plasma membrane	79.59	57.41
TraesCS2B01G530500.1	Wheat	peroxisome	78.28	56.47
TraesCS2D01G503000.1	Wheat	golgi, plastid, unclear	78.28	56.47
TraesCS2A01G502400.1	Wheat	golgi	78.28	56.47
CDX76809	Canola	cytosol, nucleus, peroxisome	12.39	55.56
CDX93092	Canola	peroxisome	76.82	55.53
CDY50939	Canola	peroxisome	76.82	55.53
CDY45757	Canola	peroxisome	76.68	54.68
CDX79363	Canola	plasma membrane	68.37	54.28
CDY34767	Canola	peroxisome	74.2	53.24
CDX87330	Canola	plasma membrane	66.76	53.19
CDY39956	Canola	plasma membrane	66.76	53.19
HORVU2Hr1G111640.2	Barley	plasma membrane	78.13	53.07
CDX67957	Canola	peroxisome	68.66	52.63
CDY03545	Canola	plastid	50.44	52.42
CDY42692	Canola	peroxisome	71.14	52.03
CDY41176	Canola	peroxisome	72.59	51.82
CDX71820	Canola	peroxisome	72.3	51.61
CDY56993	Canola	peroxisome	70.99	51.43
CDX96779	Canola	plasma membrane	70.41	51.17
CDX83917	Canola	plasma membrane	70.26	51.06
CDY30730	Canola	plasma membrane	58.16	50.7
CDX76810	Canola	plasma membrane	62.97	50.59
CDY45679	Canola	cytosol, golgi, plastid	12.1	36.89
CDY24136	Canola	mitochondrion	12.68	36.86
CDX91747	Canola	plasma membrane	11.37	36.79
CDY28277	Canola	cytosol	5.69	36.11
CDY09377	Canola	endoplasmic reticulum, plasma membrane, vacuole	11.37	34.98
CDY14177	Canola	extracellular	9.91	26.98
CDX98252	Canola	nucleus	3.06	26.58
CDY31231	Canola	plastid	7.58	26.26
CDY26756	Canola	mitochondrion	8.75	25.86
CDY13569	Canola	cytosol	2.62	20.93
CDY33128	Canola	plastid	6.56	20.36
CDY50206	Canola	endoplasmic reticulum	6.12	20.0
CDY08915	Canola	plasma membrane	7.0	16.96
CDY45897	Canola	extracellular	1.02	7.61
CDX76840	Canola	plasma membrane	0.44	2.19
CDY35173	Canola	cytosol	1.02	2.18
CDY09517	Canola	cytosol, endoplasmic reticulum, plasma membrane	0.15	0.51
CDX96220	Canola	endoplasmic reticulum, nucleus, plasma membrane	0.15	0.45
CDY62141	Canola	cytosol, endoplasmic reticulum, plasma membrane	0.15	0.44
CDY39222	Canola	plasma membrane	0.15	0.43
CDY34800	Canola	endoplasmic reticulum, plasma membrane, plastid	0.0	0.0

Protein Annotations

KEGG:00190+3.6.3.6	Gene3D:1.20.1110.10	Gene3D:2.60.120.1500	MapMan:24.1.2.3.1	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000
GO:A0A078J6N7	UniProt:A0A078J6N7	InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cation-transptr_N	InterPro:ATPase_P-typ_cyto_dom_N
InterPro:ATPase_P-typ_transduc_dom_A_sf	EnsemblPlants:CDY62140	ProteinID:CDY62140	ProteinID:CDY62140.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006139	GO:GO:0006754	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150
GO:GO:0008152	GO:GO:0008553	GO:GO:0009058	GO:GO:0009987	GO:GO:0015992	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0046872	GO:GO:0120029	GO:GO:1902600
EnsemblPlantsGene:GSBRNA2T00035993001	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214	InterPro:IPR023299	InterPro:P-type_ATPase_IIIA
PFAM:PF00122	PFAM:PF00690	PFAM:PF00702	PRINTS:PR00119	PRINTS:PR00120	ScanProsite:PS00154
PANTHER:PTHR42861	PANTHER:PTHR42861:SF40	InterPro:P_typ_ATPase	SMART:SM00831	SUPFAM:SSF56784	SUPFAM:SSF81653
SUPFAM:SSF81665	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01647	TMHMM:TMhelix	UniParc:UPI0004EE0A28	SEG:seg

Description

BnaCnng39300DPlasma membrane ATPase [Source:UniProtKB/TrEMBL;Acc:A0A078J6N7]

Coordinates

chrLK034104:+:1907..7466

Molecular Weight (calculated)

75020.5 Da

IEP (calculated)

5.701

GRAVY (calculated)

0.133

Length

686 amino acids

Sequence
(BLAST)

001: MSGLENIKNE NVDLEKIPIE EVFQQLKCTS EGLTTQEGED RIQLFGPNKL EEKKESKILK FLGFMWNPLS WVMEAAAIMA IALANGDGRP PDWQDFVGII
101: LFLFSVLNLA VIFFFETFLE LNLFCLLCFC FSSQVLRDGK WSEQEAAILV PGDIVSIKLG DIIPADARLL EGDPLKVDQS ALTGESLPVT KHPGQEVYSG
201: STCKQGEIEA VVIATGVRTF FGKAAHLVDS TNQVGHFQKV LSSIGTFCIC SIATGMVIEI IVMYGIQKRK YRDGIDNLLV LLIGGIPIAM PTVLSVTMAI
301: GSHRLSQQGA ITKRMTAIEE LAGMDVLCSD KTGTLTLNKL SVDKDLVEVF CRGVEKGQVL LFAAMASRIE NQDAIDAAMV NMLGDPREAR AGIKEVHFLP
401: FNPVDKRTAL TYIDSDGNWH RVSKGAPEQI LDLASARPAL RQKALATINN YAERGLRSLA VARQLVPEKT KESSGGPWEF VGLLPLFDPP RHDSAETIRR
501: ALNLGVNVKM ITGDQLAIGK ETGRRLGMGT NMYPSAALLG TDRDSNMASV PIEELIEKAD GFAGVFPEHK YEIVKKLQEM KHIVGMTGDG VNDAPALKKA
601: DIGIAVADAT DAARGASDIV LTEPGLSVII SAVLTSRAIF QRMKNYTIYA VSITIRIVVS RHPIYLSLVY HVFSFFGFML IALMEH

Best Arabidopsis Sequence Match ( AT2G18960.1 )
(BLAST)

001: MSGLEDIKNE TVDLEKIPIE EVFQQLKCTR EGLTTQEGED RIVIFGPNKL EEKKESKILK FLGFMWNPLS WVMEAAALMA IALANGDNRP PDWQDFVGII
101: CLLVINSTIS FIEENNAGNA AAALMAGLAP KTKVLRDGKW SEQEAAILVP GDIVSIKLGD IIPADARLLE GDPLKVDQSA LTGESLPVTK HPGQEVFSGS
201: TCKQGEIEAV VIATGVHTFF GKAAHLVDST NQVGHFQKVL TSIGNFCICS IAIGIAIEIV VMYPIQHRKY RDGIDNLLVL LIGGIPIAMP TVLSVTMAIG
301: SHRLSQQGAI TKRMTAIEEM AGMDVLCSDK TGTLTLNKLS VDKNLVEVFC KGVEKDQVLL FAAMASRVEN QDAIDAAMVG MLADPKEARA GIREVHFLPF
401: NPVDKRTALT YIDSDGNWHR VSKGAPEQIL DLANARPDLR KKVLSCIDKY AERGLRSLAV ARQVVPEKTK ESPGGPWEFV GLLPLFDPPR HDSAETIRRA
501: LNLGVNVKMI TGDQLAIGKE TGRRLGMGTN MYPSAALLGT DKDSNIASIP VEELIEKADG FAGVFPEHKY EIVKKLQERK HIVGMTGDGV NDAPALKKAD
601: IGIAVADATD AARGASDIVL TEPGLSVIIS AVLTSRAIFQ RMKNYTIYAV SITIRIVFGF MLIALIWEFD FSAFMVLIIA ILNDGTIMTI SKDRVKPSPT
701: PDSWKLKEIF ATGIVLGGYQ AIMSVIFFWA AHKTDFFSDK FGVRSIRDNN DELMGAVYLQ VSIISQALIF VTRSRSWSFV ERPGALLMIA FVIAQLVATL
801: IAVYADWTFA KVKGIGWGWA GVIWIYSIVT YFPQDILKFA IRYILSGKAW ASLFDNRTAF TTKKDYGIGE REAQWAQAQR TLHGLQPKED VNIFPEKGSY
901: RELSEIAEQA KRRAEIARLR ELHTLKGHVE SVAKLKGLDI DTAGHHYTV

Arabidopsis Description

AHA1Plasma membrane ATPase [Source:UniProtKB/TrEMBL;Acc:A0A178VSN5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.