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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome

Predictor Summary:
  • cytosol 1
  • peroxisome 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:peroxisome
Any Predictor:cytosol, peroxisome, plasma membrane
BaCelLo:cytosol
MultiLoc:peroxisome
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX82608
CDX89242
CDX97389
CDY14177
CDY14276
CDY19058
CDY29843
CDY30294
CDY45897
CDY56314
CDY56315
CDY56511
CDY62140
CDY62141
CDY64741

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G18960.1 CDX82608 AT2G18960.1 12182706
AT2G18960.1 CDY14177 AT2G18960.1 12182706
AT2G18960.1 CDY30294 AT2G18960.1 12182706
AT2G18960.1 CDY45897 AT2G18960.1 12182706
AT2G18960.1 CDY56511 AT2G18960.1 12182706
AT2G18960.1 CDY62140 AT2G18960.1 12182706
AT2G18960.1 CDY62141 AT2G18960.1 12182706
AT2G18960.1 CDY64741 AT2G18960.1 12182706
AT2G18960.1 CDX89242 AT4G27500.1 12182706
AT2G18960.1 CDX97389 AT4G27500.1 12182706
AT2G18960.1 CDY14276 AT4G27500.1 12182706
AT2G18960.1 CDY19058 AT4G27500.1 12182706
AT2G18960.1 CDY29843 AT4G27500.1 12182706
AT2G18960.1 CDY56314 AT4G27500.1 12182706
AT2G18960.1 CDY56315 AT4G27500.1 12182706
AT2G18960.1 CDX89242 AT4G27500.1 16279950
AT2G18960.1 CDX97389 AT4G27500.1 16279950
AT2G18960.1 CDY14276 AT4G27500.1 16279950
AT2G18960.1 CDY19058 AT4G27500.1 16279950
AT2G18960.1 CDY29843 AT4G27500.1 16279950
AT2G18960.1 CDY56314 AT4G27500.1 16279950
AT2G18960.1 CDY56315 AT4G27500.1 16279950
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY62140 Canola peroxisome 74.14 96.94
Bra024452.1-P Field mustard cytosol, peroxisome, plasma membrane 94.87 89.67
CDY45897 Canola extracellular 8.7 84.78
CDY64741 Canola peroxisome 88.63 83.77
CDY30294 Canola peroxisome 88.63 83.77
CDX82608 Canola peroxisome 88.52 83.67
AT2G18960.1 Thale cress peroxisome 87.74 82.93
CDY67153 Canola peroxisome 83.95 82.03
CDY51650 Canola plasma membrane 83.05 81.87
CDX72217 Canola peroxisome 82.83 81.65
CDX72218 Canola peroxisome 82.61 81.34
CDY51651 Canola plasma membrane 81.38 81.2
CDY14186 Canola plasma membrane 84.39 80.62
CDY28167 Canola peroxisome 84.5 79.96
CDY03545 Canola plastid 58.08 78.94
PGSC0003DMT400010497 Potato cytosol, peroxisome, plasma membrane 80.83 76.16
CDY69631 Canola cytosol, peroxisome, plasma membrane 44.37 75.95
CDY47940 Canola peroxisome 80.38 75.81
CDY42259 Canola peroxisome 80.38 75.81
CDY38294 Canola peroxisome 80.38 75.74
CDY25913 Canola peroxisome 80.38 75.74
CDY67606 Canola peroxisome 42.47 75.15
EES11577 Sorghum cytosol, peroxisome, plasma membrane 78.48 74.03
Os04t0656100-01 Rice plasma membrane 78.04 73.61
TraesCS2D01G503000.1 Wheat golgi, plastid, unclear 76.81 72.45
TraesCS2B01G530500.1 Wheat peroxisome 76.81 72.45
TraesCS2A01G502400.1 Wheat golgi 76.7 72.34
CDY50939 Canola peroxisome 76.03 71.87
CDX93092 Canola peroxisome 75.92 71.76
CDY39956 Canola plasma membrane 68.45 71.31
CDX87330 Canola plasma membrane 68.34 71.2
CDY62141 Canola cytosol, endoplasmic reticulum, plasma membrane 17.95 70.93
CDY45757 Canola peroxisome 75.25 70.17
CDY09517 Canola cytosol, endoplasmic reticulum, plasma membrane 15.38 70.05
CDX79363 Canola plasma membrane 67.45 70.02
CDX67957 Canola peroxisome 69.34 69.5
CDY30730 Canola plasma membrane 60.87 69.38
CDY34767 Canola peroxisome 73.13 68.62
HORVU2Hr1G111640.2 Barley plasma membrane 76.48 67.92
CDX76810 Canola plasma membrane 64.66 67.92
CDY14177 Canola extracellular 18.73 66.67
CDY41176 Canola peroxisome 70.12 65.45
CDX71820 Canola peroxisome 69.9 65.24
CDY56993 Canola peroxisome 67.89 64.31
CDY42692 Canola peroxisome 67.11 64.18
CDX96779 Canola plasma membrane 66.56 63.24
CDX91747 Canola plasma membrane 14.94 63.21
CDX83917 Canola plasma membrane 66.44 63.14
CDX96220 Canola endoplasmic reticulum, nucleus, plasma membrane 14.83 59.91
CDY39222 Canola plasma membrane 14.72 56.9
CDX76809 Canola cytosol, nucleus, peroxisome 9.7 56.86
CDY35173 Canola cytosol 19.73 55.14
CDY08915 Canola plasma membrane 14.83 47.0
CDY28277 Canola cytosol 5.24 43.52
CDX98252 Canola nucleus 3.34 37.97
CDY45679 Canola cytosol, golgi, plastid 9.25 36.89
CDY24136 Canola mitochondrion 9.7 36.86
CDY09377 Canola endoplasmic reticulum, plasma membrane, vacuole 9.14 36.77
CDX76840 Canola plasma membrane 5.02 32.85
CDY13569 Canola cytosol 2.9 30.23
CDY26756 Canola mitochondrion 7.13 27.59
CDY31231 Canola plastid 5.8 26.26
CDY33128 Canola plastid 6.35 25.79
CDY34800 Canola endoplasmic reticulum, plasma membrane, plastid 2.45 22.22
CDY50206 Canola endoplasmic reticulum 4.57 19.52
Protein Annotations
KEGG:00190+3.6.3.6Gene3D:1.20.1110.10Gene3D:2.70.150.10MapMan:24.1.2.3.1Gene3D:3.40.1110.10GO:A0A078J2P7
UniProt:A0A078J2P7InterPro:ATPase_P-typ_P_siteInterPro:ATPase_P-typ_TM_dom_sfInterPro:ATPase_P-typ_cation-transptr_NInterPro:ATPase_P-typ_cyto_dom_NInterPro:ATPase_P-typ_transduc_dom_A_sf
EnsemblPlants:CDY56511ProteinID:CDY56511ProteinID:CDY56511.1ncoils:CoilGO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0005215GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005623
GO:GO:0005886GO:GO:0006139GO:GO:0006754GO:GO:0006810GO:GO:0006811GO:GO:0008150
GO:GO:0008152GO:GO:0008553GO:GO:0009058GO:GO:0009987GO:GO:0015992GO:GO:0016020
GO:GO:0016021GO:GO:0016787GO:GO:0016887GO:GO:0046872GO:GO:0120029GO:GO:1902600
EnsemblPlantsGene:GSBRNA2T00019695001InterPro:HAD-like_sfInterPro:IPR023299InterPro:P-type_ATPase_IIIAPFAM:PF00122PFAM:PF00690
PFAM:PF00702PRINTS:PR00119PRINTS:PR00120ScanProsite:PS00154PANTHER:PTHR42861PANTHER:PTHR42861:SF19
InterPro:P_typ_ATPaseSMART:SM00831SUPFAM:SSF56784SUPFAM:SSF81653SUPFAM:SSF81665TIGRFAMs:TIGR01494
TIGRFAMs:TIGR01647TMHMM:TMhelixUniParc:UPI0004EEE8FDSEG:seg::
Description
BnaCnng30540DPlasma membrane ATPase [Source:UniProtKB/TrEMBL;Acc:A0A078J2P7]
Coordinates
chrLK033495:+:28484..35063
Molecular Weight (calculated)
99080.8 Da
IEP (calculated)
6.684
GRAVY (calculated)
0.113
Length
897 amino acids
Sequence
(BLAST)
001: MSGLENIKNE NVDLEKIPIE EVFQLLKCTS EGLTTQEGDD RIQLFGPNKL EEKKESKILK FLGFMWNPLS WVMEAAAIMA IALANGDGRP PDWQDFVGII
101: LFLFSVLNLA VIFFFETFLE LNLFCLLCFC FSSQVLRDGK WSEQEAAILV PGDIVSIKLG DIIPADARLL EGDPLKVDQS ALTGESLPVT KHPGQEVYSG
201: STCKQGEIEA VVIATGVRTF FGKAAHLVDS TNQVGHFQKV LSSIGTFCIC SIATGMVIEI IVMYGIQKRK YRDGIDNLLV LLIGGIPIAM PTVLSVTMAI
301: GSHRLSQQGA ITKRMTAIEE LAGMDVLCSD KTGTLTLNKL SVDKDLVEVF CRGVEKGQVL LFAAMASRIE NQDAIDAAMV NMLGDPREAR AGIKEVHFLP
401: FNPVDKRTAL TYIDSDGNWH RVSKGAPEQI LDLASARPAL RQKALATINN YAERGLRSLA VARQLVPEKT KESSGGPWEF VGLLPLFDPP RHDSAETIRR
501: ALNLGVNVKM ITGDQLAIGK ETGRRLGMGT NMYPSAALLG TDRDSNMASV PIEELIEKAD GFAGVFPEHK YEIVKKLQEM KHIVGMTGDG VNDAPALKKA
601: DIGIAVADAT DAARGASDIV LTEPGLSVII SAVLTSRAIF QRMKNYTIYA VSITIRIVFG FMLIALIWEF DFSAFMVLII AILNDGTIMT ISKDRVKPSP
701: TPDSWKLREI FATGIVLGGY QAVMSVIFFW AIHKTDFFSV IIITISLLFL LYANWTFAKV KGIGWGWAAV IWVYSILTYI PQDILKFAIR YILSGKAWVS
801: MFDKRTALTT RRDYGAGERQ AEWAREQRTQ HGLQTRQEVN VFPENGGYRE LSQIVEQAKK RAEIARLREI HTFKGHVESV AKLKGLDIDT SGHHYTL
Best Arabidopsis Sequence Match ( AT2G18960.1 )
(BLAST)
001: MSGLEDIKNE TVDLEKIPIE EVFQQLKCTR EGLTTQEGED RIVIFGPNKL EEKKESKILK FLGFMWNPLS WVMEAAALMA IALANGDNRP PDWQDFVGII
101: CLLVINSTIS FIEENNAGNA AAALMAGLAP KTKVLRDGKW SEQEAAILVP GDIVSIKLGD IIPADARLLE GDPLKVDQSA LTGESLPVTK HPGQEVFSGS
201: TCKQGEIEAV VIATGVHTFF GKAAHLVDST NQVGHFQKVL TSIGNFCICS IAIGIAIEIV VMYPIQHRKY RDGIDNLLVL LIGGIPIAMP TVLSVTMAIG
301: SHRLSQQGAI TKRMTAIEEM AGMDVLCSDK TGTLTLNKLS VDKNLVEVFC KGVEKDQVLL FAAMASRVEN QDAIDAAMVG MLADPKEARA GIREVHFLPF
401: NPVDKRTALT YIDSDGNWHR VSKGAPEQIL DLANARPDLR KKVLSCIDKY AERGLRSLAV ARQVVPEKTK ESPGGPWEFV GLLPLFDPPR HDSAETIRRA
501: LNLGVNVKMI TGDQLAIGKE TGRRLGMGTN MYPSAALLGT DKDSNIASIP VEELIEKADG FAGVFPEHKY EIVKKLQERK HIVGMTGDGV NDAPALKKAD
601: IGIAVADATD AARGASDIVL TEPGLSVIIS AVLTSRAIFQ RMKNYTIYAV SITIRIVFGF MLIALIWEFD FSAFMVLIIA ILNDGTIMTI SKDRVKPSPT
701: PDSWKLKEIF ATGIVLGGYQ AIMSVIFFWA AHKTDFFSDK FGVRSIRDNN DELMGAVYLQ VSIISQALIF VTRSRSWSFV ERPGALLMIA FVIAQLVATL
801: IAVYADWTFA KVKGIGWGWA GVIWIYSIVT YFPQDILKFA IRYILSGKAW ASLFDNRTAF TTKKDYGIGE REAQWAQAQR TLHGLQPKED VNIFPEKGSY
901: RELSEIAEQA KRRAEIARLR ELHTLKGHVE SVAKLKGLDI DTAGHHYTV
Arabidopsis Description
AHA1Plasma membrane ATPase [Source:UniProtKB/TrEMBL;Acc:A0A178VSN5]
SUBAcon: [peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.