Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 3
- endoplasmic reticulum 5
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24136 | Canola | mitochondrion | 68.57 | 61.02 |
| CDY09377 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 60.95 | 57.4 |
| CDY26756 | Canola | mitochondrion | 60.95 | 55.17 |
| Bra039509.1-P | Field mustard | cytosol, mitochondrion | 32.38 | 40.0 |
| GSMUA_Achr8P28430_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 28.1 | 32.96 |
| CDY31231 | Canola | plastid | 18.1 | 19.19 |
| CDY45679 | Canola | cytosol, golgi, plastid | 15.71 | 14.67 |
| CDY33128 | Canola | plastid | 11.43 | 10.86 |
| CDX76809 | Canola | cytosol, nucleus, peroxisome | 5.71 | 7.84 |
| CDY67606 | Canola | peroxisome | 18.1 | 7.5 |
| CDY69631 | Canola | cytosol, peroxisome, plasma membrane | 18.1 | 7.25 |
| CDY62140 | Canola | peroxisome | 20.0 | 6.12 |
| CDY47940 | Canola | peroxisome | 23.33 | 5.15 |
| CDY42259 | Canola | peroxisome | 23.33 | 5.15 |
| CDY38294 | Canola | peroxisome | 23.33 | 5.15 |
| CDY25913 | Canola | peroxisome | 23.33 | 5.15 |
| CDX98252 | Canola | nucleus | 1.9 | 5.06 |
| CDY64741 | Canola | peroxisome | 21.43 | 4.74 |
| CDY30294 | Canola | peroxisome | 21.43 | 4.74 |
| CDX82608 | Canola | peroxisome | 21.43 | 4.74 |
| CDY67153 | Canola | peroxisome | 20.0 | 4.58 |
| CDY56511 | Canola | peroxisome | 19.52 | 4.57 |
| CDX72217 | Canola | peroxisome | 19.52 | 4.51 |
| CDY51650 | Canola | plasma membrane | 19.52 | 4.51 |
| CDX72218 | Canola | peroxisome | 19.52 | 4.5 |
| CDY51651 | Canola | plasma membrane | 19.05 | 4.45 |
| CDY28167 | Canola | peroxisome | 20.0 | 4.43 |
| CDY14186 | Canola | plasma membrane | 19.52 | 4.37 |
| CDX67957 | Canola | peroxisome | 18.57 | 4.36 |
| CDY34767 | Canola | peroxisome | 19.52 | 4.29 |
| CDY45757 | Canola | peroxisome | 19.05 | 4.16 |
| CDX93092 | Canola | peroxisome | 18.57 | 4.11 |
| CDY50939 | Canola | peroxisome | 18.57 | 4.11 |
| CDY42692 | Canola | peroxisome | 18.1 | 4.05 |
| CDY56993 | Canola | peroxisome | 18.1 | 4.01 |
| CDX71820 | Canola | peroxisome | 18.1 | 3.95 |
| CDY41176 | Canola | peroxisome | 18.1 | 3.95 |
| CDX96779 | Canola | plasma membrane | 17.62 | 3.92 |
| CDX83917 | Canola | plasma membrane | 17.62 | 3.92 |
| CDX79363 | Canola | plasma membrane | 15.71 | 3.82 |
| CDY39956 | Canola | plasma membrane | 15.24 | 3.72 |
| CDX87330 | Canola | plasma membrane | 15.24 | 3.72 |
| CDY03545 | Canola | plastid | 11.43 | 3.64 |
| CDX76810 | Canola | plasma membrane | 14.76 | 3.63 |
| CDY30730 | Canola | plasma membrane | 10.48 | 2.8 |
| CDY08915 | Canola | plasma membrane | 1.9 | 1.41 |
| CDY13569 | Canola | cytosol | 0.48 | 1.16 |
| CDY45897 | Canola | extracellular | 0.48 | 1.09 |
| CDY35173 | Canola | cytosol | 1.43 | 0.93 |
| CDY28277 | Canola | cytosol | 0.48 | 0.93 |
| CDY14177 | Canola | extracellular | 0.95 | 0.79 |
| CDX91747 | Canola | plasma membrane | 0.48 | 0.47 |
| CDY09517 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 0.0 | 0.0 |
| CDX96220 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 0.0 | 0.0 |
| CDY62141 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 0.0 | 0.0 |
| CDY34800 | Canola | endoplasmic reticulum, plasma membrane, plastid | 0.0 | 0.0 |
| CDX76840 | Canola | plasma membrane | 0.0 | 0.0 |
| CDY39222 | Canola | plasma membrane | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY50206 | EnsemblPlantsGene:GSBRNA2T00096149001 | Gene3D:2.60.120.620 | GO:A0A078IJN2 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | PANTHER:PTHR10869 | PANTHER:PTHR10869:SF42 | ProteinID:CDY50206 | ProteinID:CDY50206.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0004EF06EE | UniProt:A0A078IJN2 | MapMan:35.1 | : | : |
Description
BnaC07g06380DBnaC07g06380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJN2]
Coordinates
chrLK032889:+:75687..77271
Molecular Weight (calculated)
24022.5 Da
IEP (calculated)
10.037
GRAVY (calculated)
-0.031
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGGDVLSWF PLVSQLLIVS NSGTGFPSIR GLRGQKARYL RDVSRWANDK DAELLRLGYA ILFILSFFFP SKFSFLHLCC LKEIEEVKPE VVSWSPRIIV
101: LHNFLSSEEC EYLKAIARPR LQVSTVVDIK TGKLKLKSDV RTSSGILDLY NTRADLRKKD HLAIDKYALR GLSETRLKLG MGSNMYPYHQ LLYLDKKAIR
201: ESLGNQVMFF
101: LHNFLSSEEC EYLKAIARPR LQVSTVVDIK TGKLKLKSDV RTSSGILDLY NTRADLRKKD HLAIDKYALR GLSETRLKLG MGSNMYPYHQ LLYLDKKAIR
201: ESLGNQVMFF
001: MAPAMKIVFG LLTFVTVGMV IGSLLQLAFI NRLEDSYGTG FPSLRGLRGQ NTRYLRDVSR WANDKDAELL RIGNVKPEVV SWSPRIIVLH DFLSPEECEY
101: LKAIARPRLQ VSTVVDVKTG KGVKSDVRTS SGMFLTHVER SYPIIQAIEK RIAVFSQVPA ENGELIQVLR YEPQQFYKPH HDYFADTFNL KRGGQRVATM
201: LMYLTDDVEG GETYFPLAGD GDCTCGGKIM KGISVKPTKG DAVLFWSMGL DGQSDPRSIH GGCEVLSGEK WSATKWMRQK ATS
101: LKAIARPRLQ VSTVVDVKTG KGVKSDVRTS SGMFLTHVER SYPIIQAIEK RIAVFSQVPA ENGELIQVLR YEPQQFYKPH HDYFADTFNL KRGGQRVATM
201: LMYLTDDVEG GETYFPLAGD GDCTCGGKIM KGISVKPTKG DAVLFWSMGL DGQSDPRSIH GGCEVLSGEK WSATKWMRQK ATS
Arabidopsis Description
P4H1Prolyl 4-hydroxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW86]
SUBAcon: [endoplasmic reticulum,plasma membrane]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.