CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09377	Canola	endoplasmic reticulum, plasma membrane, vacuole	69.4	72.2
CDY24136	Canola	mitochondrion	71.12	69.92
Bra039509.1-P	Field mustard	cytosol, mitochondrion	45.26	61.76
CDY50206	Canola	endoplasmic reticulum	55.17	60.95
GSMUA_Achr8P28430_001	Banana	endoplasmic reticulum, golgi, plasma membrane	25.43	32.96
CDY31231	Canola	plastid	21.98	25.76
CDY45679	Canola	cytosol, golgi, plastid	17.67	18.22
CDY33128	Canola	plastid	16.81	17.65
CDY69631	Canola	cytosol, peroxisome, plasma membrane	23.28	10.31
CDY67606	Canola	peroxisome	22.41	10.26
CDY62140	Canola	peroxisome	25.86	8.75
CDX76809	Canola	cytosol, nucleus, peroxisome	5.17	7.84
CDY42259	Canola	peroxisome	29.74	7.26
CDY47940	Canola	peroxisome	29.74	7.26
CDY25913	Canola	peroxisome	29.31	7.14
CDY38294	Canola	peroxisome	29.31	7.14
CDY56511	Canola	peroxisome	27.59	7.13
CDY03545	Canola	plastid	20.26	7.12
CDX82608	Canola	peroxisome	28.88	7.06
CDY64741	Canola	peroxisome	28.88	7.06
CDY30294	Canola	peroxisome	28.88	7.06
CDY67153	Canola	peroxisome	27.59	6.97
CDY51650	Canola	plasma membrane	27.16	6.92
CDX72217	Canola	peroxisome	26.72	6.81
CDX72218	Canola	peroxisome	26.72	6.81
CDY34767	Canola	peroxisome	28.02	6.8
CDY51651	Canola	plasma membrane	26.29	6.79
CDY28167	Canola	peroxisome	27.59	6.75
CDY14186	Canola	plasma membrane	27.16	6.71
CDX76810	Canola	plasma membrane	23.71	6.44
CDY50939	Canola	peroxisome	25.86	6.32
CDX93092	Canola	peroxisome	25.86	6.32
CDX67957	Canola	peroxisome	24.14	6.26
CDY45757	Canola	peroxisome	25.86	6.24
CDX79363	Canola	plasma membrane	22.41	6.02
CDY42692	Canola	peroxisome	24.14	5.97
CDX87330	Canola	plasma membrane	21.98	5.92
CDY39956	Canola	plasma membrane	21.98	5.92
CDY56993	Canola	peroxisome	24.14	5.91
CDX71820	Canola	peroxisome	24.14	5.83
CDY41176	Canola	peroxisome	24.14	5.83
CDX83917	Canola	plasma membrane	23.71	5.83
CDX96779	Canola	plasma membrane	23.71	5.83
CDY45897	Canola	extracellular	2.16	5.43
CDY30730	Canola	plasma membrane	18.1	5.34
CDY08915	Canola	plasma membrane	4.74	3.89
CDX98252	Canola	nucleus	1.29	3.8
CDX91747	Canola	plasma membrane	2.59	2.83
CDY14177	Canola	extracellular	2.59	2.38
CDX76840	Canola	plasma membrane	1.29	2.19
CDY28277	Canola	cytosol	0.86	1.85
CDY35173	Canola	cytosol	1.72	1.25
CDY13569	Canola	cytosol	0.43	1.16
CDY62141	Canola	cytosol, endoplasmic reticulum, plasma membrane	0.0	0.0
CDX96220	Canola	endoplasmic reticulum, nucleus, plasma membrane	0.0	0.0
CDY09517	Canola	cytosol, endoplasmic reticulum, plasma membrane	0.0	0.0
CDY39222	Canola	plasma membrane	0.0	0.0
CDY34800	Canola	endoplasmic reticulum, plasma membrane, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDY26756	EnsemblPlantsGene:GSBRNA2T00035678001	Gene3D:2.60.120.620	GO:A0A078GN32	PANTHER:PTHR10869	PANTHER:PTHR10869:SF42
ProteinID:CDY26756	ProteinID:CDY26756.1	UniParc:UPI0004EE16C8	UniProt:A0A078GN32	MapMan:35.1	:

Description

BnaC09g08830DBnaC09g08830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GN32]

Coordinates

chrLK032194:-:35341..36921

Molecular Weight (calculated)

26469.3 Da

IEP (calculated)

10.247

GRAVY (calculated)

-0.043

Length

232 amino acids

Sequence
(BLAST)

001: MFFLRFIITE KIRLFIVSNS GTGFPSIRGL RGHKARYLRD VSWWANDKDA ELLRLGYVKP EVVSWSPRII VLHNFLSSEE CEYLKAIARP RLQVSTVVDI
101: KTGKGVKSDV RTNSGILDRY NTRDDLRKID HLAIDKYALR GLRSLAVARQ TVPEKTKKNA LVIHGNSLVG CLCLILHDMI VHTPLEELQT SVSTSVINLL
201: FPVRLDLSSV WDQTCIHTIS FSTWIRKPSE RV

Best Arabidopsis Sequence Match ( AT2G43080.2 )
(BLAST)

001: MAPAMKIVFG LLTFVTVGMV IGSLLQLAFI NRLEDSYGTG FPSLRGLRGQ NTRYLRDVSR WANDKDAELL RIGNVKPEVV SWSPRIIVLH DFLSPEECEY
101: LKAIARPRLQ VSTVVDVKTG KGVKSDVRTS SGMFLTHVER SYPIIQAIEK RIAVFSQVPA ENGELIQVLS ADMSRSSFTN HITITLLTLS I

Arabidopsis Description

P4H1Prolyl 4-hydroxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW86]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.