CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX82608
CDY14177
CDY30294
CDY45897
CDY56511
CDY62140
CDY62141
CDY64741

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27500.1	CDX82608	AT2G18960.1	12182706
AT4G27500.1	CDY14177	AT2G18960.1	12182706
AT4G27500.1	CDY30294	AT2G18960.1	12182706
AT4G27500.1	CDY45897	AT2G18960.1	12182706
AT4G27500.1	CDY56511	AT2G18960.1	12182706
AT4G27500.1	CDY62140	AT2G18960.1	12182706
AT4G27500.1	CDY62141	AT2G18960.1	12182706
AT4G27500.1	CDY64741	AT2G18960.1	12182706
AT4G27500.1	CDX82608	AT2G18960.1	16279950
AT4G27500.1	CDY14177	AT2G18960.1	16279950
AT4G27500.1	CDY30294	AT2G18960.1	16279950
AT4G27500.1	CDY45897	AT2G18960.1	16279950
AT4G27500.1	CDY56511	AT2G18960.1	16279950
AT4G27500.1	CDY62140	AT2G18960.1	16279950
AT4G27500.1	CDY62141	AT2G18960.1	16279950
AT4G27500.1	CDY64741	AT2G18960.1	16279950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019045.1-P	Field mustard	nucleus	98.67	97.85
CDY56314	Canola	nucleus	66.17	85.38
CDX89242	Canola	cytoskeleton, cytosol, nucleus	53.0	74.13
CDX97389	Canola	nucleus	73.17	71.27
CDY14276	Canola	nucleus	71.33	68.81
AT4G27500.1	Thale cress	nucleus	69.17	67.81
CDY19058	Canola	endoplasmic reticulum, nucleus, plastid	63.5	62.56
CDY56315	Canola	nucleus	10.0	56.6
KRH22077	Soybean	endoplasmic reticulum	48.5	47.24
VIT_19s0014g02640.t01	Wine grape	extracellular, nucleus	44.17	46.82
PGSC0003DMT400032400	Potato	nucleus	48.67	46.42
GSMUA_Achr6P21610_001	Banana	cytosol	33.0	46.37
KRH27251	Soybean	endoplasmic reticulum, nucleus	46.5	46.19
Solyc07g063100.2.1	Tomato	nucleus	48.33	46.18
Solyc12g013860.1.1	Tomato	unclear	24.17	43.67
KRH55252	Soybean	nucleus	48.0	43.31
HORVU2Hr1G081330.1	Barley	cytosol, nucleus	24.0	42.23
HORVU5Hr1G041880.1	Barley	nucleus	43.67	42.12
Zm00001d005636_P001	Maize	nucleus	43.17	41.98
EER96610	Sorghum	nucleus	43.0	41.82
EER96609	Sorghum	cytosol	21.83	41.07
TraesCS5A01G186800.1	Wheat	nucleus	42.33	40.97
HORVU4Hr1G058930.1	Barley	nucleus	37.67	40.87
TraesCS5B01G185200.2	Wheat	nucleus	42.5	40.48
Zm00001d020175_P002	Maize	golgi, plasma membrane	43.33	40.37
TraesCS5D01G192100.1	Wheat	nucleus	42.5	39.97
Os08t0390000-02	Rice	nucleus	41.17	39.77
Os09t0346400-01	Rice	golgi, plasma membrane	41.33	39.55
HORVU0Hr1G030120.1	Barley	nucleus, plastid	43.67	38.93
CDY24116	Canola	nucleus	23.33	35.18
CDY26009	Canola	nucleus	22.17	33.25
CDX98546	Canola	nucleus	30.17	32.04
CDX75821	Canola	nucleus	32.5	31.97
CDX97649	Canola	nucleus	28.83	31.28
CDX82440	Canola	nucleus	31.5	30.63
CDY04588	Canola	nucleus	22.67	9.94
CDY29491	Canola	nucleus	22.33	9.71

Protein Annotations

MapMan:35.1	GO:A0A078GZ27	UniProt:A0A078GZ27	EnsemblPlants:CDY29843	ProteinID:CDY29843	ProteinID:CDY29843.1
ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0010155	GO:GO:0016020	GO:GO:0016021
EnsemblPlantsGene:GSBRNA2T00044278001	InterPro:PPI	PANTHER:PTHR32219	PANTHER:PTHR32219:SF2	TMHMM:TMhelix	UniParc:UPI0004EF04BA
SEG:seg	:	:	:	:	:

Description

BnaA03g48640DBnaA03g48640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZ27]

Coordinates

chrLK032245:+:26851..29836

Molecular Weight (calculated)

67789.2 Da

IEP (calculated)

9.759

GRAVY (calculated)

-0.896

Length

600 amino acids

Sequence
(BLAST)

001: MGVEVVKFGG FEAAPAPFEG KPETNGKVVD KVAIKDADKP PKKADESPNN NVLISDVPKD AAEEWPAAKQ IRSFYFVKYR HFDDPKIKAK LDVADKELEK
101: LSKARSAVYE QLKAKRAERS ELFDLLDPLK TERQGYNTKF DEKRKEMEPL QQALGKLRGN DGGSARGPAI CSSEEELNNM IYSYQYRIQH ESIPLTEEKQ
201: LLKEIRLLEG TRDKVIANEA VRAKIKESMG QKDDIQGQVK LMGAGLDGVK KERQAISARI NQLSEKVKAA KDEIQVLENE LKTVTEKRDK AYSNIRELRK
301: QRDENNSGFY QGRVVLNKAR DLAAQKNVEE LEALSNAEVE KFISLWCSKK NFREDYEKRL LPSLDARQLS RDGRMRNPEE KPLIAPEAPS QAKAVTEVVP
401: KAKAKQQQPK EEPVSAPKPE APAVQKTEKK GKDAAKVKNV VVADEEEDEE VYGLGKPQEE KKKVDEAALR EMRKQEEIAK AKLAMERKKK QAEKAAAKAA
501: KRALMEAEKK EKKEREKKAK KSGIEAVSEE VPEASEAEKE ETEAPVEEKP VRNRIRTRGG PETLPRAILK RKKATNYWIY AAPAALVVLM LLVLGYYYVL

Best Arabidopsis Sequence Match ( AT4G27500.1 )
(BLAST)

001: MGVEVVNSGG FEVAPAPFEG KPEKNGKLDQ GKGDDAPINF GSVGELPKNA EENNNKVVNS DAPKNAAEEW PVAKQIHSFY LVKYRSYADP KIKAKLDLAD
101: KELEKLNKAR TGVLDKLRAK RAERSELFDL LDPLKSERKG FNTMFDEKRK EMEPLQQALG KLRSNDGGSA RGPAICSSEE ELNSMIYSYQ YRIQHESIPL
201: TEEKQILKEI RLLEGTRDKV IANAAMRAKI KESMGQKDDI QGQVKLMGAG LDGVKKERQA ISARINELSE KLKATKDEIT VLENELKTVS EKRDKAYSNI
301: HDLRRQRDET NSEYYQNRTV LNKARDLAAQ KNISELEALA NAEVEKFISL WCSKKNFRED YEKRILQSLD SRQLSRDGRM RNPDEKPLIA PEAAPSKATP
401: SETEVVPKAK AKPQPKEEPV SAPKPDATVA QNTEKAKDAV KVKNVADDDD DEVYGLGKPQ KEEKPVDAAT AKEMRKQEEI AKAKQAMERK KKLAEKAAAK
501: AAIRAQKEAE KKEKKEQEKK AKKKTGGNTE TETEEVPEAS EEEIEAPVQE EKPQKEKVFK EKPIRNRTRG RGPETIPRAI LKRKKSTNYW VYAAPAALVV
601: LLLLVLGYYY VL

Arabidopsis Description

PPI1Proton pump-interactor 1 [Source:UniProtKB/Swiss-Prot;Acc:O23144]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.