CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES11577

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27500.1	EES11577	AT2G18960.1	12182706
AT4G27500.1	EES11577	AT2G18960.1	16279950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G081330.1	Barley	cytosol, nucleus	52.98	49.56
EER96610	Sorghum	nucleus	65.52	33.87
HORVU4Hr1G058930.1	Barley	nucleus	57.99	33.45
GSMUA_Achr6P21610_001	Banana	cytosol	44.51	33.26
HORVU5Hr1G041880.1	Barley	nucleus	59.25	30.39
TraesCS5A01G186800.1	Wheat	nucleus	58.62	30.16
TraesCS5B01G185200.2	Wheat	nucleus	58.62	29.68
TraesCS5D01G192100.1	Wheat	nucleus	58.62	29.31
CDX89242	Canola	cytoskeleton, cytosol, nucleus	39.19	29.14
Os09t0346400-01	Rice	golgi, plasma membrane	57.05	29.03
HORVU0Hr1G030120.1	Barley	nucleus, plastid	59.25	28.08
CDY56314	Canola	nucleus	40.75	27.96
Solyc12g013860.1.1	Tomato	unclear	28.53	27.41
VIT_19s0014g02640.t01	Wine grape	extracellular, nucleus	42.63	24.03
KRH27251	Soybean	endoplasmic reticulum, nucleus	41.38	21.85
CDY29843	Canola	nucleus	41.07	21.83
Bra019045.1-P	Field mustard	nucleus	41.07	21.65
KRH22077	Soybean	endoplasmic reticulum	41.38	21.43
AT4G27500.1	Thale cress	nucleus	40.13	20.91
CDY14276	Canola	nucleus	40.75	20.9
CDX97389	Canola	nucleus	40.13	20.78
CDY19058	Canola	endoplasmic reticulum, nucleus, plastid	37.93	19.87
Solyc07g063100.2.1	Tomato	nucleus	38.56	19.59
Bra026343.1-P	Field mustard	nucleus	38.56	19.4
KRH55252	Soybean	nucleus	40.44	19.4
PGSC0003DMT400032400	Potato	nucleus	38.24	19.4
Bra010401.1-P	Field mustard	nucleus	40.75	17.4
Bra001590.1-P	Field mustard	nucleus	26.02	14.02
CDX98546	Canola	nucleus	24.76	13.98
CDX97649	Canola	nucleus	24.14	13.92
AT3G15340.3	Thale cress	nucleus	25.71	13.92
AT1G53110.1	Thale cress	nucleus	19.12	13.9
Bra019016.1-P	Field mustard	nucleus	16.93	13.6
CDY24116	Canola	nucleus	16.93	13.57
CDY26009	Canola	nucleus	16.93	13.5
CDX82440	Canola	nucleus	26.02	13.45
CDX75821	Canola	nucleus	25.71	13.44
AT5G36780.1	Thale cress	nucleus	23.82	13.19
AT5G36690.1	Thale cress	nucleus	23.82	13.19
Bra027261.1-P	Field mustard	nucleus	23.2	13.07
CDY56315	Canola	nucleus	3.13	9.43
OQU89707	Sorghum	nucleus	19.75	4.14

Protein Annotations

EnsemblPlants:EER96609	EnsemblPlantsGene:SORBI_3002G176900	EntrezGene:8054597	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0010155
GO:GO:0016020	InterPro:PPI	ncoils:Coil	PANTHER:PTHR32219	PANTHER:PTHR32219:SF2	ProteinID:EER96609
ProteinID:EER96609.1	RefSeq:XP_002460088.1	UniParc:UPI0001A83975	UniProt:C5XAJ8	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr2:+:55659829..55666947

Molecular Weight (calculated)

36980.3 Da

IEP (calculated)

8.434

GRAVY (calculated)

-0.706

Length

319 amino acids

Sequence
(BLAST)

001: MEPPIYGMGR PKSTYAFYFV KIRSFEDPQL REKFMDAQNK FEKEIQARSK IIEAVRAKKM ERSTIISELK PLTAQNKRYN EVVAEKLKEM ELPQNRLGMF
101: LKNDDMQAQR AGFCSSVEEL EQTIKMSNDR IAHKSISLRE EKCLANEIKN LEKNISKVIY NSTIRAKLQD TVDGNEIRQD QVRIIDGTRK EQQAVRSKIK
201: GLEDELRVVD TEIASIQEDL DAATARKDKA YESLVELRTV HDAKNASLIE NCCVLDKARD YASRRLVAEL GALHEAEVDK FMAQWCNSKA FREDYEKRTI
301: SSLIVRQLDR DGRMRIPDY

Best Arabidopsis Sequence Match ( AT4G27500.1 )
(BLAST)

001: MGVEVVNSGG FEVAPAPFEG KPEKNGKLDQ GKGDDAPINF GSVGELPKNA EENNNKVVNS DAPKNAAEEW PVAKQIHSFY LVKYRSYADP KIKAKLDLAD
101: KELEKLNKAR TGVLDKLRAK RAERSELFDL LDPLKSERKG FNTMFDEKRK EMEPLQQALG KLRSNDGGSA RGPAICSSEE ELNSMIYSYQ YRIQHESIPL
201: TEEKQILKEI RLLEGTRDKV IANAAMRAKI KESMGQKDDI QGQVKLMGAG LDGVKKERQA ISARINELSE KLKATKDEIT VLENELKTVS EKRDKAYSNI
301: HDLRRQRDET NSEYYQNRTV LNKARDLAAQ KNISELEALA NAEVEKFISL WCSKKNFRED YEKRILQSLD SRQLSRDGRM RNPDEKPLIA PEAAPSKATP
401: SETEVVPKAK AKPQPKEEPV SAPKPDATVA QNTEKAKDAV KVKNVADDDD DEVYGLGKPQ KEEKPVDAAT AKEMRKQEEI AKAKQAMERK KKLAEKAAAK
501: AAIRAQKEAE KKEKKEQEKK AKKKTGGNTE TETEEVPEAS EEEIEAPVQE EKPQKEKVFK EKPIRNRTRG RGPETIPRAI LKRKKSTNYW VYAAPAALVV
601: LLLLVLGYYY VL

Arabidopsis Description

PPI1Proton pump-interactor 1 [Source:UniProtKB/Swiss-Prot;Acc:O23144]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.