Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26009 | Canola | nucleus | 51.71 | 56.75 |
| Bra019016.1-P | Field mustard | nucleus | 50.57 | 55.92 |
| CDY24116 | Canola | nucleus | 50.11 | 55.28 |
| AT3G15340.3 | Thale cress | nucleus | 43.05 | 32.09 |
| AT5G36690.1 | Thale cress | nucleus | 40.77 | 31.08 |
| AT5G36780.1 | Thale cress | nucleus | 40.77 | 31.08 |
| KRH27251 | Soybean | endoplasmic reticulum, nucleus | 34.85 | 25.33 |
| AT4G27500.1 | Thale cress | nucleus | 34.85 | 25.0 |
| KRH22077 | Soybean | endoplasmic reticulum | 34.62 | 24.68 |
| VIT_19s0014g02640.t01 | Wine grape | extracellular, nucleus | 29.16 | 22.61 |
| Solyc07g063100.2.1 | Tomato | nucleus | 31.44 | 21.97 |
| PGSC0003DMT400032400 | Potato | nucleus | 31.44 | 21.94 |
| Zm00001d005636_P001 | Maize | nucleus | 29.84 | 21.23 |
| KRH55252 | Soybean | nucleus | 31.89 | 21.05 |
| EER96610 | Sorghum | nucleus | 29.39 | 20.91 |
| Os09t0346400-01 | Rice | golgi, plasma membrane | 29.84 | 20.89 |
| TraesCS5A01G186800.1 | Wheat | nucleus | 29.16 | 20.65 |
| HORVU5Hr1G041880.1 | Barley | nucleus | 28.93 | 20.42 |
| TraesCS5B01G185200.2 | Wheat | nucleus | 29.16 | 20.32 |
| TraesCS5D01G192100.1 | Wheat | nucleus | 29.39 | 20.22 |
| Zm00001d020175_P002 | Maize | golgi, plasma membrane | 28.93 | 19.72 |
| Os08t0390000-02 | Rice | nucleus | 27.79 | 19.65 |
| HORVU4Hr1G058930.1 | Barley | nucleus | 24.6 | 19.53 |
| GSMUA_Achr6P21610_001 | Banana | cytosol | 18.68 | 19.2 |
| EER96609 | Sorghum | cytosol | 13.9 | 19.12 |
| HORVU0Hr1G030120.1 | Barley | nucleus, plastid | 28.93 | 18.87 |
| HORVU2Hr1G081330.1 | Barley | cytosol, nucleus | 14.35 | 18.48 |
| Solyc12g013860.1.1 | Tomato | unclear | 10.25 | 13.55 |
| AT1G20970.1 | Thale cress | nucleus | 18.22 | 5.87 |
Protein Annotations
| MapMan:35.1 | EntrezGene:841745 | ProteinID:AAF87866.1 | ProteinID:AEE32892.1 | ArrayExpress:AT1G53110 | EnsemblPlantsGene:AT1G53110 |
| RefSeq:AT1G53110 | TAIR:AT1G53110 | RefSeq:AT1G53110-TAIR-G | EnsemblPlants:AT1G53110.1 | TAIR:AT1G53110.1 | EMBL:AY063988 |
| Unigene:At.27117 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0010155 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_175719.1 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0025022 | InterPro:PPI | PANTHER:PTHR32219 | PANTHER:PTHR32219:SF2 | UniProt:Q8VZN4 |
| TMHMM:TMhelix | UniParc:UPI00000AB827 | SEG:seg | : | : | : |
Description
PPI4Proton pump-interactor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZN4]
Coordinates
chr1:+:19790142..19792589
Molecular Weight (calculated)
51020.1 Da
IEP (calculated)
9.244
GRAVY (calculated)
-0.738
Length
439 amino acids
Sequence
(BLAST)
(BLAST)
001: MSASILLCDG FDVRRILTGK LNGDESSTVT TEEDDEAVFS GEEWCGESSY CFYFVKQFAY DDPEIKAKID EADHEVYHCN TDRIHIANRL KSKRAARLSL
101: VASMETLMSM KINEVEKEQE VVRGRIYRLG ERLSEIKMEI ELLDVQMACV LNQRDKAVER IKFLRMQRDK GNAAFYQSRV VMKKAIELAA SGNVRDLEEL
201: ADSEVEKFMS RWNNDKAFRD NYKKRILPSV NERKLRCDVQ IRDLEGNLDT ENGNETVVKK AIEYKRFSTE EESDDFDIPV YEKLGKEEKE IDEETLKEKK
301: REEQLEKARL AMERKRKLHE KAAAKAVIRV KKEAEKKRKE LDKRAKKKKA VCKSSSVDVD RTTETVSEAS KPEKEKLLNG RSVFPKQRSY NYRYHGKGND
401: AVLKAIIKRR KAYRLWVWTV SSAAVALPLA LLVVFYYVR
101: VASMETLMSM KINEVEKEQE VVRGRIYRLG ERLSEIKMEI ELLDVQMACV LNQRDKAVER IKFLRMQRDK GNAAFYQSRV VMKKAIELAA SGNVRDLEEL
201: ADSEVEKFMS RWNNDKAFRD NYKKRILPSV NERKLRCDVQ IRDLEGNLDT ENGNETVVKK AIEYKRFSTE EESDDFDIPV YEKLGKEEKE IDEETLKEKK
301: REEQLEKARL AMERKRKLHE KAAAKAVIRV KKEAEKKRKE LDKRAKKKKA VCKSSSVDVD RTTETVSEAS KPEKEKLLNG RSVFPKQRSY NYRYHGKGND
401: AVLKAIIKRR KAYRLWVWTV SSAAVALPLA LLVVFYYVR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.