Subcellular Localization
min:
: max
Winner_takes_all: golgi, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 6
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
25769308
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G178400.1 | |
| TraesCS6B01G205800.2 | |
| TraesCS6D01G166200.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G19990.1 | TraesCS6A01G178400.1 | AT5G19960.1 | 21798944 |
| AT5G19990.1 | TraesCS6B01G205800.2 | AT5G19960.1 | 21798944 |
| AT5G19990.1 | TraesCS6D01G166200.2 | AT5G19960.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G177600.1 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCS6B01G207100.1 | Wheat | cytosol | 100.0 | 100.0 |
| Zm00001d053616_P002 | Maize | cytosol | 97.85 | 96.92 |
| Zm00001d016439_P003 | Maize | cytosol, extracellular, plasma membrane | 97.61 | 96.68 |
| Os02t0205300-01 | Rice | cytosol | 97.85 | 96.46 |
| TraesCS7D01G350300.1 | Wheat | cytosol | 95.45 | 94.33 |
| VIT_04s0008g04690.t01 | Wine grape | cytosol | 92.82 | 92.38 |
| VIT_09s0002g05800.t01 | Wine grape | cytosol | 92.11 | 92.33 |
| CDX70903 | Canola | cytosol | 91.87 | 92.31 |
| GSMUA_Achr10P... | Banana | cytosol | 92.58 | 92.14 |
| CDY35832 | Canola | cytosol | 92.34 | 92.12 |
| AT5G19990.1 | Thale cress | cytosol | 92.34 | 92.12 |
| Bra002279.1-P | Field mustard | cytosol | 91.87 | 91.65 |
| KRH44668 | Soybean | cytosol, mitochondrion, nucleus | 91.39 | 91.39 |
| Bra006529.1-P | Field mustard | cytosol | 91.39 | 91.17 |
| Solyc05g018570.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 90.91 | 91.13 |
| Solyc05g018590.2.1 | Tomato | nucleus | 90.91 | 91.13 |
| KRH46990 | Soybean | nucleus | 90.91 | 90.91 |
| HORVU6Hr1G036990.7 | Barley | cytosol | 100.0 | 90.48 |
| AT5G20000.1 | Thale cress | cytosol | 90.43 | 90.21 |
| PGSC0003DMT400038718 | Potato | cytosol | 80.86 | 78.06 |
| CDX88865 | Canola | cytosol, extracellular | 87.8 | 58.35 |
| CDY42324 | Canola | cytosol, extracellular | 91.63 | 53.42 |
| CDY44958 | Canola | cytosol, plasma membrane | 91.87 | 53.26 |
| Bra020079.1-P | Field mustard | cytosol | 91.63 | 53.12 |
| TraesCS6D01G149500.1 | Wheat | cytosol | 39.23 | 45.56 |
| TraesCS6D01G326400.1 | Wheat | cytosol | 46.17 | 45.31 |
| TraesCS7D01G157200.1 | Wheat | cytosol | 45.69 | 44.84 |
| TraesCS7D01G375500.1 | Wheat | cytosol | 41.15 | 43.0 |
| TraesCS7D01G532000.1 | Wheat | cytosol | 39.95 | 41.96 |
| TraesCS4D01G190600.1 | Wheat | cytosol, golgi | 41.63 | 38.67 |
| TraesCS2D01G087900.1 | Wheat | cytosol, golgi | 41.39 | 38.53 |
| TraesCS2D01G083900.1 | Wheat | golgi | 37.8 | 38.07 |
| TraesCS3D01G417000.1 | Wheat | cytosol | 39.47 | 38.02 |
| TraesCS2D01G476000.1 | Wheat | cytosol | 37.8 | 37.89 |
| TraesCS7D01G134800.1 | Wheat | cytosol | 38.76 | 37.76 |
| TraesCS2D01G471200.1 | Wheat | cytosol | 38.52 | 35.54 |
| TraesCS1D01G340100.1 | Wheat | cytosol | 19.86 | 32.42 |
| TraesCS3D01G153300.1 | Wheat | cytosol | 17.22 | 32.14 |
| TraesCS1D01G194500.1 | Wheat | cytosol | 20.1 | 31.7 |
| TraesCS2D01G353100.1 | Wheat | cytosol | 29.19 | 21.48 |
| TraesCS7D01G023600.1 | Wheat | mitochondrion | 30.62 | 16.31 |
| TraesCS3D01G153800.1 | Wheat | cytosol | 26.32 | 16.18 |
| TraesCS3D01G443600.1 | Wheat | mitochondrion | 28.71 | 16.04 |
| TraesCS5D01G081900.1 | Wheat | mitochondrion | 28.23 | 15.88 |
| TraesCS3D01G154000.1 | Wheat | cytosol | 28.95 | 15.36 |
| TraesCS4D01G267600.2 | Wheat | cytosol | 29.67 | 15.16 |
| TraesCS4D01G267800.1 | Wheat | cytosol | 29.43 | 15.13 |
| TraesCS1D01G399100.1 | Wheat | cytosol | 28.47 | 15.08 |
| TraesCS1D01G248000.1 | Wheat | cytosol | 28.23 | 14.96 |
| TraesCS1D01G253100.1 | Wheat | cytosol | 28.23 | 14.75 |
| TraesCS3D01G153900.1 | Wheat | cytosol | 27.75 | 14.72 |
| TraesCS1D01G223800.1 | Wheat | cytosol | 27.99 | 14.62 |
| TraesCS6D01G360700.1 | Wheat | cytosol | 23.92 | 13.59 |
| TraesCS2D01G458300.3 | Wheat | mitochondrion | 27.27 | 12.22 |
| TraesCS4D01G105500.2 | Wheat | cytosol, plastid | 28.23 | 11.73 |
| TraesCS1D01G073600.1 | Wheat | cytosol, plastid | 27.99 | 11.64 |
| TraesCS7D01G277100.1 | Wheat | cytosol, peroxisome, plastid | 26.08 | 10.0 |
| TraesCS5D01G306600.2 | Wheat | mitochondrion | 25.6 | 9.78 |
| Bra006530.1-P | Field mustard | cytosol, nucleus, plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.6.2.1.6 | Gene3D:2.40.50.140 | InterPro:26S_Psome_P45-like | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase |
| InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0030163 |
| InterPro:P-loop_NTPase | PFAM:PF00004 | ScanProsite:PS00674 | PANTHER:PTHR23073 | PANTHER:PTHR23073:SF57 | SMART:SM00382 |
| SUPFAM:SSF52540 | TIGRFAMs:TIGR01242 | EnsemblPlantsGene:TraesCS6D01G166700 | EnsemblPlants:TraesCS6D01G166700.1 | TIGR:cd00009 | SEG:seg |
Description
No Description!
Coordinates
chr6D:+:148765140..148768638
Molecular Weight (calculated)
46766.2 Da
IEP (calculated)
9.513
GRAVY (calculated)
-0.368
Length
418 amino acids
Sequence
(BLAST)
(BLAST)
001: MATVAMDISK PPPAASGDES AKGARGGGEG LRQYYLQHIH DLQLQIRQKT HNLNRLEAQR NDLNSRVRML REELQLLQEP GSYVGEVVKV MGKSKVLVKV
101: HPEGKYVVDI DKSIDITKIT PSTRVALRND SYMLHLVLPS KVDPLVNLMK VEKVPDSTYD MIGGLDQQIK EIKEVIELPI KHPELFESLG IAQPKGVLLY
201: GPPGTGKTLL ARAVAHHTDC TFIRVSGSEL VQKYIGEGSR MVRELFVMAR EHAPSIIFMD EIDSIGSARM ESGTGNGDSE VQRTMLELLN QLDGFEASNK
301: IKVLMATNRI DILDQALLRP GRIDRKIEFP NPNEDSRGDI LKIHSRRMNL MRGIDLKKIA GKMNGASGAE LKAVCTEAGM FALRERRVHV TQEDFEMAVA
401: KVMKKDNEKN MSLRKLWK
101: HPEGKYVVDI DKSIDITKIT PSTRVALRND SYMLHLVLPS KVDPLVNLMK VEKVPDSTYD MIGGLDQQIK EIKEVIELPI KHPELFESLG IAQPKGVLLY
201: GPPGTGKTLL ARAVAHHTDC TFIRVSGSEL VQKYIGEGSR MVRELFVMAR EHAPSIIFMD EIDSIGSARM ESGTGNGDSE VQRTMLELLN QLDGFEASNK
301: IKVLMATNRI DILDQALLRP GRIDRKIEFP NPNEDSRGDI LKIHSRRMNL MRGIDLKKIA GKMNGASGAE LKAVCTEAGM FALRERRVHV TQEDFEMAVA
401: KVMKKDNEKN MSLRKLWK
001: MAAVGVDSRR PETAMEETCN VKGAAAKQGE GLKQYYLQHI HELQRQLRQK TNNLNRLEAQ RNELNSRVRM LREELQLLQE PGSYVGEVVK VMGKNKVLVK
101: VHPEGKYVVD IDKSIDITKI TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEESRFD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWK
101: VHPEGKYVVD IDKSIDITKI TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEESRFD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWK
Arabidopsis Description
RPT6A26S proteasome regulatory subunit 8 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9C5U3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.