Factsheet for PGSC0003DMT400038718

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g018590.2.1	Tomato	nucleus	85.91	89.21
Solyc05g018570.2.1	Tomato	cytosol, extracellular, nucleus, plastid	85.68	88.97
VIT_09s0002g05800.t01	Wine grape	cytosol	79.68	82.73
GSMUA_Achr7P09950_001	Banana	cytosol	76.91	82.63
KRH44668	Soybean	cytosol, mitochondrion, nucleus	79.21	82.06
KRH46990	Soybean	nucleus	78.98	81.82
CDY35832	Canola	cytosol	78.98	81.62
AT5G19990.1	Thale cress	cytosol	78.98	81.62
Bra002279.1-P	Field mustard	cytosol	78.52	81.15
Zm00001d016439_P003	Maize	cytosol, extracellular, plasma membrane	78.98	81.04
Zm00001d053616_P002	Maize	cytosol	78.98	81.04
TraesCS6D01G166700.1	Wheat	cytosol, golgi	78.06	80.86
TraesCS6B01G207100.1	Wheat	cytosol	78.06	80.86
TraesCS6A01G177600.1	Wheat	cytosol	78.06	80.86
CDX70903	Canola	cytosol	77.6	80.77
Os02t0205300-01	Rice	cytosol	78.98	80.66
AT5G20000.1	Thale cress	cytosol	77.6	80.19
Bra006529.1-P	Field mustard	cytosol	77.6	80.19
HORVU7Hr1G084550.2	Barley	cytosol	78.29	80.14
TraesCS7D01G350300.1	Wheat	cytosol	78.29	80.14
TraesCS7B01G254400.1	Wheat	cytosol	78.29	80.14
TraesCS7A01G372600.1	Wheat	cytosol	78.29	80.14
Os06t0600100-01	Rice	plasma membrane	74.6	76.36
EER88603	Sorghum	cytosol	72.29	74.7
HORVU6Hr1G036990.7	Barley	cytosol	78.06	73.16
CDX88865	Canola	cytosol, extracellular	74.13	51.03
CDY42324	Canola	cytosol, extracellular	78.75	47.56
CDY44958	Canola	cytosol, plasma membrane	78.75	47.3
Bra020079.1-P	Field mustard	cytosol	78.52	47.16
PGSC0003DMT400006190	Potato	cytosol	30.95	41.1
PGSC0003DMT400023656	Potato	cytosol	39.03	39.49
PGSC0003DMT400079514	Potato	cytosol	36.03	39.2
PGSC0003DMT400012446	Potato	cytosol	38.8	39.16
PGSC0003DMT400078301	Potato	cytosol	33.95	35.51
PGSC0003DMT400053010	Potato	cytosol	33.72	35.35
PGSC0003DMT400051744	Potato	cytosol	34.87	34.01
PGSC0003DMT400063574	Potato	cytosol	33.03	33.81
PGSC0003DMT400040872	Potato	cytosol	34.64	33.78
PGSC0003DMT400018483	Potato	cytosol	22.63	23.9
PGSC0003DMT400072919	Potato	cytosol	23.56	16.69
PGSC0003DMT400055513	Potato	cytosol	26.56	14.25
PGSC0003DMT400050662	Potato	cytosol	26.33	14.16
PGSC0003DMT400031321	Potato	cytosol	26.33	14.16
PGSC0003DMT400027096	Potato	cytosol	26.1	13.99
PGSC0003DMT400046624	Potato	cytosol	26.1	13.95
PGSC0003DMT400015455	Potato	mitochondrion	24.02	13.63
PGSC0003DMT400046254	Potato	cytosol	24.25	12.77
PGSC0003DMT400013679	Potato	cytosol	23.09	10.75
Os06t0600301-00	Rice	plasma membrane	1.62	3.1
Bra006530.1-P	Field mustard	cytosol, nucleus, plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:102583713	EntrezGene:102596259	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300
MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016787	GO:GO:0019538
GO:GO:0030163	UniProt:M1B7A1	InterPro:P-loop_NTPase	PFAM:PF00004	EnsemblPlantsGene:PGSC0003DMG400014964	PGSC:PGSC0003DMG400014964
EnsemblPlants:PGSC0003DMT400038718	PANTHER:PTHR23073	PANTHER:PTHR23073:SF57	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242
UniParc:UPI00029645BB	:	:	:	:	:

Description

ATSUG1 [Source:PGSC_GENE;Acc:PGSC0003DMG400014964]

Coordinates

chr5:-:19532113..19537392

Molecular Weight (calculated)

49021.4 Da

IEP (calculated)

9.930

GRAVY (calculated)

-0.327

Length

433 amino acids

Sequence
(BLAST)

001: MASVDVEKSR SDMEREEACS AKPTKQGEGL RQYYMQHIHD LQLQVRVKTH NLNRLEAQRN ELNSKVRMLK EELQLLQEPG SYVGEVVKVM GKSKVLVKVH
101: PEGKYVVDIG KNIDITKITP STRVALRNDS YVLHLILPSK VDPLVNLMKV EKVPDSTYDM IGGLDQQIKE IKEVIELPIK HPELFESLGI AQPKGVLLYG
201: PPGTGKTLLA RAVAHHTDCT FIRVSGSELV QKYIGEGSRM VRELFVMARG EVPYHGFLPD SILGPLFKRE ALDLLGWNQG VAMVTVKCRG QCLNFSISLM
301: DLRHQIKSRQ AQRAVSIVLM ATNRIDILDQ ALLRPGRIDR KIEFPNPNEE SRQDILKIHS RKMNLMRGID LKKIAEKMSG ASGAELKAVC TEAGMFALRE
401: RRVHVTQEDF EMAVAKVMKK ETEKNMSLRK LWK

Best Arabidopsis Sequence Match ( AT5G19990.1 )
(BLAST)

001: MAAVGVDSRR PETAMEETCN VKGAAAKQGE GLKQYYLQHI HELQRQLRQK TNNLNRLEAQ RNELNSRVRM LREELQLLQE PGSYVGEVVK VMGKNKVLVK
101: VHPEGKYVVD IDKSIDITKI TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEESRFD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWK

Arabidopsis Description

RPT6A26S proteasome regulatory subunit 8 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9C5U3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.