Factsheet for PGSC0003DMT400015455

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046254	Potato	cytosol	77.06	71.53
CDY25624	Canola	cytosol	21.49	65.34
Zm00001d009592_P001	Maize	cytosol	20.58	59.92
VIT_01s0010g02600.t01	Wine grape	cytosol	61.99	57.33
KRH44049	Soybean	nucleus	58.98	56.89
GSMUA_Achr4P03560_001	Banana	mitochondrion	56.23	54.86
CDX74308	Canola	mitochondrion	49.41	53.4
Zm00001d035913_P002	Maize	cytosol, mitochondrion	50.59	52.66
Zm00001d045566_P001	Maize	cytosol, mitochondrion	52.95	52.6
Os06t0109400-01	Rice	cytosol	52.42	51.95
EER87717	Sorghum	cytosol	52.42	51.61
CDX91939	Canola	cytosol, mitochondrion	51.64	50.71
TraesCS5D01G081900.1	Wheat	mitochondrion	48.89	50.2
Zm00001d022096_P002	Maize	mitochondrion	49.8	50.2
TraesCS7D01G023600.1	Wheat	mitochondrion	51.11	49.68
TraesCS7A01G025800.1	Wheat	mitochondrion	51.11	49.68
TraesCS4A01G463300.1	Wheat	mitochondrion	50.85	49.43
TraesCS3B01G487900.1	Wheat	mitochondrion	48.1	49.26
CDX84794	Canola	cytosol	47.97	49.26
TraesCS3D01G443600.1	Wheat	mitochondrion	47.97	48.93
TraesCS3A01G450800.1	Wheat	mitochondrion	47.84	48.93
CDY23949	Canola	cytosol	46.4	48.83
Bra022833.1-P	Field mustard	cytosol	47.44	48.72
Bra000999.1-P	Field mustard	cytosol, mitochondrion	52.82	48.38
Zm00001d027244_P001	Maize	cytosol	23.07	48.09
AT3G01610.2	Thale cress	nucleus	52.29	48.07
HORVU7Hr1G002880.2	Barley	plastid	49.67	47.32
Zm00001d002717_P001	Maize	mitochondrion	25.16	47.06
CDY45794	Canola	nucleus	48.89	46.8
Zm00001d053999_P001	Maize	cytosol	23.72	44.04
CDX89698	Canola	endoplasmic reticulum	40.1	44.03
PGSC0003DMT400018483	Potato	cytosol	18.09	33.66
PGSC0003DMT400072919	Potato	cytosol	25.82	32.24
PGSC0003DMT400031321	Potato	cytosol	32.63	30.93
PGSC0003DMT400050662	Potato	cytosol	32.37	30.68
PGSC0003DMT400006190	Potato	cytosol	13.11	30.67
PGSC0003DMT400055513	Potato	cytosol	32.37	30.61
PGSC0003DMT400027096	Potato	cytosol	32.11	30.32
PGSC0003DMT400046624	Potato	cytosol	31.85	30.0
PGSC0003DMT400079514	Potato	cytosol	15.6	29.9
PGSC0003DMT400053010	Potato	cytosol	14.94	27.6
PGSC0003DMT400023656	Potato	cytosol	15.33	27.34
PGSC0003DMT400078301	Potato	cytosol	14.81	27.29
PGSC0003DMT400012446	Potato	cytosol	15.33	27.27
PGSC0003DMT400040872	Potato	cytosol	15.33	26.35
PGSC0003DMT400051744	Potato	cytosol	15.2	26.13
PGSC0003DMT400063574	Potato	cytosol	14.15	25.53
PGSC0003DMT400038718	Potato	cytosol	13.63	24.02
PGSC0003DMT400013679	Potato	cytosol	23.98	19.68

Protein Annotations

EnsemblPlants:PGSC0003DMT400015455	EnsemblPlantsGene:PGSC0003DMG400006034	Gene3D:1.10.8.60	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:P-loop_NTPase
PANTHER:PTHR23077	PANTHER:PTHR23077:SF55	PFAM:PF00004	PGSC:PGSC0003DMG400006034	ScanProsite:PS00674	SEG:seg
SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI0002955A1B	UniProt:M1A623	MapMan:35.1	:

Description

Protein cdcH [Source:PGSC_GENE;Acc:PGSC0003DMG400006034]

Coordinates

chr11:-:8039178..8044192

Molecular Weight (calculated)

84940.8 Da

IEP (calculated)

6.686

GRAVY (calculated)

-0.456

Length

763 amino acids

Sequence
(BLAST)

001: MPKRGRSGGR GPLSVKLRRR IVSCKNNCIT DEELVDHLRN SFRADYYNLQ LQPFTSQVQN ILQLINPPIK KPKTDSTEQI LDGDGELSTL ASISESDDSY
101: SCGEKPDLMQ IMLRNTYNQK VNSIPKSKKI EYDASSISKS IFFEYDVIHD SNEDEKGKKI DMVKRDLSKL LGIGDSDRNG GPMFKDLGGM DEVLEELKME
201: IMVPLYHPQA TRYLGIRPYS GVLFHGPPGC GKTKLAHAIA NEARVPFYKL SATELVSGVS GASEENIREL FLKAHRTAPS IVFIDEIDAI ASKRENAQRE
301: MERRIVTQLM TCMDESHRPV KPDDNAKGTT LPTDKKNTEE ESDDEPGYVL VIGATNRPDA IDPALRRPGR FDCEYALGIP DENARMQILS VLTRNLRVEG
401: AFDLMKIATS TPGFVGADLA SLTNKAGNLV LKRIMDARKV ELSRESVDGE DAEEWWRKPL SPEEKEKLSI NMADFEEAAK LVQPSSRREG FSVVPNVKWE
501: DVGGLDPLRH EFERYIVRRI KNPKDYMGFG VDLETGFLLY GPPGCGKTLI AKAVANEAGA NFIHIKGPEV LNKYVGQSEL NIRTIFNRAR TCSPCIVFFD
601: EMDSLTTERG KEGNEPVERI VTQLLTELDG GEERKGVYVI GATNRPNVMD KALLRPGRLG RLLYVPLPTP DQRVLILKAL ARKKPIDSSV DLVSIGRNNA
701: CKRFSGADLS SLMNEAAMLA LEDTLAAIDT GCGDTSSTIK ESHFRRALKK ISPSVSNEVK LIR

Best Arabidopsis Sequence Match ( AT3G01610.2 )
(BLAST)

001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE DEIEKARTKS

Arabidopsis Description

CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.