Factsheet for PGSC0003DMT400072919

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g012190.2.1	Tomato	cytosol	97.87	97.87
KRH70928	Soybean	cytosol	73.0	73.6
AT2G03670.1	Thale cress	cytosol	69.39	70.32
CDY04161	Canola	cytosol	67.92	68.82
Bra017378.1-P	Field mustard	cytosol	67.76	68.66
KXG26645	Sorghum	cytosol	62.03	66.73
Zm00001d025776_P002	Maize	cytosol	61.7	66.37
TraesCS2A01G355200.1	Wheat	cytosol	61.54	66.31
TraesCS2B01G373100.1	Wheat	cytosol	61.54	66.08
HORVU2Hr1G086170.2	Barley	cytosol	61.21	65.73
TraesCS2D01G353100.1	Wheat	cytosol	61.05	65.67
Os05t0376200-00	Rice	cytosol	41.9	65.47
Os04t0498800-01	Rice	cytosol	59.25	62.63
GSMUA_Achr6P11080_001	Banana	plastid	59.9	61.1
CDY33111	Canola	endoplasmic reticulum, plasma membrane, vacuole	67.59	57.68
PGSC0003DMT400018483	Potato	cytosol	23.73	35.37
PGSC0003DMT400006190	Potato	cytosol	18.0	33.74
CDY02982	Canola	cytosol	64.98	33.67
PGSC0003DMT400027096	Potato	cytosol	38.3	28.96
PGSC0003DMT400046624	Potato	cytosol	38.3	28.89
PGSC0003DMT400055513	Potato	cytosol	38.13	28.87
PGSC0003DMT400031321	Potato	cytosol	37.97	28.82
PGSC0003DMT400050662	Potato	cytosol	37.81	28.7
PGSC0003DMT400063574	Potato	cytosol	19.64	28.37
PGSC0003DMT400053010	Potato	cytosol	19.15	28.33
PGSC0003DMT400078301	Potato	cytosol	19.15	28.26
PGSC0003DMT400079514	Potato	cytosol	18.17	27.89
PGSC0003DMT400040872	Potato	cytosol	20.13	27.7
PGSC0003DMT400051744	Potato	cytosol	20.13	27.7
PGSC0003DMT400023656	Potato	cytosol	18.33	26.17
PGSC0003DMT400012446	Potato	cytosol	18.17	25.87
PGSC0003DMT400015455	Potato	mitochondrion	32.24	25.82
PGSC0003DMT400046254	Potato	cytosol	33.88	25.18
PGSC0003DMT400038718	Potato	cytosol	16.69	23.56
PGSC0003DMT400013679	Potato	cytosol	27.5	18.06

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:102593678	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	UniProt:M1CR69	InterPro:P-loop_NTPase	PFAM:PF00004	EnsemblPlantsGene:PGSC0003DMG400028368
PGSC:PGSC0003DMG400028368	EnsemblPlants:PGSC0003DMT400072919	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF117	SMART:SM00382
SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI000296BAF9	RefSeq:XP_006348680.1	SEG:seg	:

Description

Transitional endoplasmic reticulum ATPase [Source:PGSC_GENE;Acc:PGSC0003DMG400028368]

Coordinates

chr5:+:602301..608416

Molecular Weight (calculated)

66703.7 Da

IEP (calculated)

7.405

GRAVY (calculated)

-0.161

Length

611 amino acids

Sequence
(BLAST)

001: MESSSGSTSC AGEWRAEEAI AGNAEALRVL RELITYPLLY SAESRKLGLK WPRGLLLYGP PGTGKTSLVR AVVQECGAHL IVISPHSVHR AHAGESEKIL
101: REAFSEASSH AKLGKPSVIF LDEIDALCPR RDSRREQEIR VASQLFMLMD SIKSSSTSVS HVVVVASTNR PDAIDPALRR AGRFDAEIEV TTPTEEERLH
201: ILKLYTNKLQ LDASVDLRAV AVSCNGYVGA DLEALCREAA MSAVRKCSDS NLEDSSYSIN MEDWKHARSV VGPSITRGVT VEIPKVSWED IGGLKDIKKK
301: LQQAVEWPLK HSEAFERLGV SPSRGILLHG PPGCSKTTLA KAAAHAAQAS FFSLSGAELY SMYVGEGEAL LRNAFRRARL AAPSIIFFDE ADVVATKRGG
401: SSSGSSTVGE RLLSTLLTEM DGLEQAKGIL VLAATNRPHA IDAALMRPGR FDLVLYVPPP DLEARFEVLS VHTRDMKLNN NVNLRQIAED TELFTGAELE
501: GLCREAGIVA LRENISATVV SDRHFQTVKK SLKPALTKEE VASYSSFMNN RSERSAHSFE SISSKRDNKQ TKNLLVFAGP VTITVISIAM YIGVRYFLMS
601: TETSTRELTS T

Best Arabidopsis Sequence Match ( AT2G03670.1 )
(BLAST)

001: MLETESSVCD NIAGNEKWRA EAEIGGNERA LQALRELIIF PFRYPLEART LGLKWPRGLL LYGPPGTGKT SLVRAVVQEC DAHLIVLSPH SVHRAHAGES
101: EKVLREAFAE ASSHAVSDKP SVIFIDEIDV LCPRRDARRE QDVRIASQLF TLMDSNKPSS SAPRVVVVAS TNRVDAIDPA LRRAGRFDAL VEVSTPNEED
201: RLKILQLYTK KVNLDPSVDL QAIAISCNGY VGADLEALCR EATISASKRS SDSLILTSQD FKIAKSVVGP SINRGITVEI PKVTWDDVGG LKDLKKKLQQ
301: AVEWPIKHSA AFVKMGISPM RGILLHGPPG CSKTTLAKAA ANAAQASFFS LSCAELFSMY VGEGEALLRN TFQRARLASP SIIFFDEADV VACKRGDESS
401: SNSSTVGERL LSTLLTEMDG LEEAKGILVL AATNRPYAID AALMRPGRFD LVLYVPPPDL EARFEILQVH TRNMTLGDDV DLRKIAEETD LFTGAELEGL
501: CRESGTVSLR ENIAATAVFN RHFQTAKSSL KPALTIEEVE TYSSFRKAAK RSDSKPIPIN KKKATSTVFG FSWQLGVLSL LLLATGNYYF NHTKHELLVA
601: SAT

Arabidopsis Description

CDC48BCell division control protein 48 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.