Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04161 | Canola | cytosol | 89.39 | 89.39 |
| Bra017378.1-P | Field mustard | cytosol | 89.22 | 89.22 |
| CDY33111 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 88.56 | 74.58 |
| KRH70928 | Soybean | cytosol | 72.47 | 72.11 |
| Solyc05g012190.2.1 | Tomato | cytosol | 70.48 | 69.56 |
| PGSC0003DMT400072919 | Potato | cytosol | 70.32 | 69.39 |
| Os05t0376200-00 | Rice | cytosol | 42.29 | 65.22 |
| KXG26645 | Sorghum | cytosol | 61.03 | 64.79 |
| TraesCS2A01G355200.1 | Wheat | cytosol | 60.2 | 64.02 |
| TraesCS2B01G373100.1 | Wheat | cytosol | 60.2 | 63.8 |
| HORVU2Hr1G086170.2 | Barley | cytosol | 60.2 | 63.8 |
| Zm00001d025776_P002 | Maize | cytosol | 60.03 | 63.73 |
| TraesCS2D01G353100.1 | Wheat | cytosol | 59.7 | 63.38 |
| Os04t0498800-01 | Rice | cytosol | 58.21 | 60.73 |
| GSMUA_Achr6P11080_001 | Banana | plastid | 59.37 | 59.77 |
| CDY02982 | Canola | cytosol | 81.92 | 41.9 |
| AT1G09100.1 | Thale cress | cytosol | 19.4 | 27.66 |
| AT1G45000.1 | Thale cress | cytosol | 18.24 | 27.57 |
| AT3G05530.1 | Thale cress | cytosol | 19.24 | 27.36 |
| AT5G43010.1 | Thale cress | cytosol | 18.08 | 27.32 |
| AT5G19990.1 | Thale cress | cytosol | 18.91 | 27.21 |
| AT5G58290.1 | Thale cress | cytosol | 18.41 | 27.21 |
| AT3G53230.1 | Thale cress | cytosol | 36.65 | 27.12 |
| AT3G09840.1 | Thale cress | cytosol | 36.32 | 27.07 |
| AT5G20000.1 | Thale cress | cytosol | 18.74 | 26.97 |
| AT5G03340.1 | Thale cress | cytosol | 35.99 | 26.79 |
| AT1G53750.1 | Thale cress | cytosol | 18.91 | 26.76 |
| AT4G29040.1 | Thale cress | cytosol | 19.57 | 26.64 |
| AT2G20140.1 | Thale cress | cytosol | 19.57 | 26.64 |
| AT3G01610.2 | Thale cress | nucleus | 34.0 | 24.7 |
| AT3G56690.1 | Thale cress | cytosol, plastid | 34.66 | 20.45 |
| AT1G03000.1 | Thale cress | mitochondrion | 27.69 | 17.75 |
| AT1G53780.2 | Thale cress | cytosol | 17.91 | 17.42 |
| AT5G08470.1 | Thale cress | cytosol | 28.52 | 15.22 |
Protein Annotations
| Gene3D:1.10.8.60 | Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:814895 | UniProt:A0A178VXL7 | InterPro:AAA+_ATPase |
| ProteinID:AAD20084.1 | ProteinID:AEC05734.1 | ArrayExpress:AT2G03670 | EnsemblPlantsGene:AT2G03670 | RefSeq:AT2G03670 | TAIR:AT2G03670 |
| RefSeq:AT2G03670-TAIR-G | EnsemblPlants:AT2G03670.1 | TAIR:AT2G03670.1 | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | EMBL:AY062443 |
| EMBL:BT008371 | Symbol:CDC48B | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005856 |
| GO:GO:0006810 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009524 | GO:GO:0009987 | GO:GO:0015031 |
| GO:GO:0051301 | RefSeq:NP_178463.1 | ProteinID:OAP11070.1 | InterPro:P-loop_NTPase | PFAM:PF00004 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | ScanProsite:PS00674 |
| PANTHER:PTHR23077 | PANTHER:PTHR23077:SF117 | UniProt:Q9ZPR1 | SMART:SM00382 | SUPFAM:SSF52540 | UniParc:UPI0000126C1F |
| SEG:seg | : | : | : | : | : |
Description
CDC48BCell division control protein 48 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPR1]
Coordinates
chr2:+:1117485..1120458
Molecular Weight (calculated)
65913.0 Da
IEP (calculated)
7.077
GRAVY (calculated)
-0.109
Length
603 amino acids
Sequence
(BLAST)
(BLAST)
001: MLETESSVCD NIAGNEKWRA EAEIGGNERA LQALRELIIF PFRYPLEART LGLKWPRGLL LYGPPGTGKT SLVRAVVQEC DAHLIVLSPH SVHRAHAGES
101: EKVLREAFAE ASSHAVSDKP SVIFIDEIDV LCPRRDARRE QDVRIASQLF TLMDSNKPSS SAPRVVVVAS TNRVDAIDPA LRRAGRFDAL VEVSTPNEED
201: RLKILQLYTK KVNLDPSVDL QAIAISCNGY VGADLEALCR EATISASKRS SDSLILTSQD FKIAKSVVGP SINRGITVEI PKVTWDDVGG LKDLKKKLQQ
301: AVEWPIKHSA AFVKMGISPM RGILLHGPPG CSKTTLAKAA ANAAQASFFS LSCAELFSMY VGEGEALLRN TFQRARLASP SIIFFDEADV VACKRGDESS
401: SNSSTVGERL LSTLLTEMDG LEEAKGILVL AATNRPYAID AALMRPGRFD LVLYVPPPDL EARFEILQVH TRNMTLGDDV DLRKIAEETD LFTGAELEGL
501: CRESGTVSLR ENIAATAVFN RHFQTAKSSL KPALTIEEVE TYSSFRKAAK RSDSKPIPIN KKKATSTVFG FSWQLGVLSL LLLATGNYYF NHTKHELLVA
601: SAT
101: EKVLREAFAE ASSHAVSDKP SVIFIDEIDV LCPRRDARRE QDVRIASQLF TLMDSNKPSS SAPRVVVVAS TNRVDAIDPA LRRAGRFDAL VEVSTPNEED
201: RLKILQLYTK KVNLDPSVDL QAIAISCNGY VGADLEALCR EATISASKRS SDSLILTSQD FKIAKSVVGP SINRGITVEI PKVTWDDVGG LKDLKKKLQQ
301: AVEWPIKHSA AFVKMGISPM RGILLHGPPG CSKTTLAKAA ANAAQASFFS LSCAELFSMY VGEGEALLRN TFQRARLASP SIIFFDEADV VACKRGDESS
401: SNSSTVGERL LSTLLTEMDG LEEAKGILVL AATNRPYAID AALMRPGRFD LVLYVPPPDL EARFEILQVH TRNMTLGDDV DLRKIAEETD LFTGAELEGL
501: CRESGTVSLR ENIAATAVFN RHFQTAKSSL KPALTIEEVE TYSSFRKAAK RSDSKPIPIN KKKATSTVFG FSWQLGVLSL LLLATGNYYF NHTKHELLVA
601: SAT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.