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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • peroxisome 1
  • mitochondrion 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:peroxisome
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX69950 Canola cytosol 85.4 88.37
CDY62119 Canola cytosol 84.96 87.91
Bra009342.1-P Field mustard cytosol 86.81 87.51
VIT_00s0125g00170.t01 Wine grape cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole 61.95 61.73
KRH50491 Soybean cytosol 58.05 58.05
Solyc04g057960.2.1 Tomato endoplasmic reticulum, plasma membrane 56.81 56.91
GSMUA_Achr11P... Banana cytosol 54.51 54.95
HORVU0Hr1G013350.2 Barley cytosol 14.78 54.22
EES15200 Sorghum cytosol 46.55 48.08
TraesCS7B01G174800.1 Wheat cytosol 43.1 47.28
TraesCS7D01G277100.1 Wheat cytosol, peroxisome, plastid 45.4 47.06
TraesCS7A01G277100.1 Wheat peroxisome 45.4 47.06
HORVU7Hr1G058410.7 Barley cytosol, peroxisome 45.4 46.34
Zm00001d049974_P004 Maize peroxisome 44.6 45.2
TraesCS5D01G306600.2 Wheat mitochondrion 43.54 44.97
TraesCS5B01G299200.1 Wheat mitochondrion 43.45 44.88
TraesCS5A01G301500.1 Wheat mitochondrion 42.04 44.15
HORVU5Hr1G078590.8 Barley plastid 43.63 43.63
AT1G45000.1 Thale cress cytosol 10.44 29.57
AT5G43010.1 Thale cress cytosol 10.35 29.32
AT2G03670.1 Thale cress cytosol 15.22 28.52
AT5G58290.1 Thale cress cytosol 10.0 27.7
AT5G20000.1 Thale cress cytosol 10.09 27.21
AT5G19990.1 Thale cress cytosol 10.09 27.21
AT4G29040.1 Thale cress cytosol 10.09 25.73
AT2G20140.1 Thale cress cytosol 10.09 25.73
AT5G03340.1 Thale cress cytosol 18.23 25.43
AT3G09840.1 Thale cress cytosol 18.14 25.34
AT1G53750.1 Thale cress cytosol 9.47 25.12
AT3G53230.1 Thale cress cytosol 17.88 24.79
AT3G05530.1 Thale cress cytosol 8.76 23.35
AT3G01610.2 Thale cress nucleus 16.99 23.13
AT1G09100.1 Thale cress cytosol 8.58 22.93
AT1G03000.1 Thale cress mitochondrion 17.79 21.36
AT3G56690.1 Thale cress cytosol, plastid 18.58 20.55
AT1G53780.2 Thale cress cytosol 10.27 18.71
Protein Annotations
Gene3D:1.10.8.60MapMan:23.4.1.5.1.1Gene3D:3.10.330.10Gene3D:3.40.50.300EntrezGene:830746InterPro:AAA+_ATPase
ProteinID:AED91307.1EMBL:AF275382ArrayExpress:AT5G08470EnsemblPlantsGene:AT5G08470RefSeq:AT5G08470TAIR:AT5G08470
RefSeq:AT5G08470-TAIR-GEnsemblPlants:AT5G08470.1TAIR:AT5G08470.1InterPro:ATPase_AAA_CSInterPro:ATPase_AAA_coreInterPro:Asp_de-COase-like_dom_sf
Unigene:At.8759ProteinID:BAB09996.1InterPro:CDC48_domain_2-like_sfncoils:CoilGO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005777GO:GO:0005778GO:GO:0006625GO:GO:0006629
GO:GO:0006635GO:GO:0006810GO:GO:0007031GO:GO:0008150GO:GO:0008152GO:GO:0009056
GO:GO:0009987GO:GO:0015031GO:GO:0016020GO:GO:0016043GO:GO:0016558GO:GO:0016787
GO:GO:0042623RefSeq:NP_196464.2InterPro:P-loop_NTPaseInterPro:PEX-N_psi_beta-barrelSymbol:PEX1PFAM:PF00004
PFAM:PF09262PO:PO:0000037PO:PO:0000293PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009046
PO:PO:0009047PO:PO:0009052PO:PO:0020100PO:PO:0025022ScanProsite:PS00674PANTHER:PTHR23077
PANTHER:PTHR23077:SF12InterPro:Pex1UniProt:Q9FNP1SMART:SM00382SUPFAM:SSF50692SUPFAM:SSF52540
SUPFAM:SSF54585UniParc:UPI0000196C4BSEG:seg:::
Description
PEX1Peroxisome biogenesis protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNP1]
Coordinates
chr5:+:2735911..2743065
Molecular Weight (calculated)
123851.0 Da
IEP (calculated)
6.304
GRAVY (calculated)
-0.131
Length
1130 amino acids
Sequence
(BLAST)
0001: MSRNRQIIIP DDVMETEAVV NTVAGVDCFV SLPRQLLHAL QSTSSSPLPP LLPVELRSGD RRWSVAWSGS SSSSSAIEIA RVFAESISLP DGTVVKVRVL
0101: PNVPKATLVT VEPETEDDWE VLELNAELAE AAILSQVRIL HETMKFPLWL HDRTVIRFSV VSTFPSKGVV QLVPGTEVAV APKRRDRNLK AKKSQEKECN
0201: NVKALLRVQE TDRSAFHEAD VKGFELRVAL TSIAYIHPET AKKHSLESLQ LISVSPRIPL KGSAKKDEAL NMKNSEASKV AENGTSSAKK EPRQAILRLV
0301: FSDLAAKGHL MMVESLRLYL GAGLHSWVYL RGCNVNEDKE IPALSLSPCV FKISENEKVL DKGTDRLGNN NSVRKSSHPP SGLSTYVDVV DWSVHDKVVT
0401: ALSSEGLHDE GNHDKNKKGL EYLTRLWSLA QLDAMASVTG VDVSSLIVGR ETFFHFEVRG LESYKSIDGQ PSVNDRWESG KKDKHTPLEI LYVMTVSDES
0501: LLGDKFAGYD LSLDRSEKSD NVVHIEPVLE KMNLGEPIYL KSAKETHCNK GVSPDISSLT WMGPIVSDVI KRMTVLLSPA AGMWFSKFKI PSPGHILIYG
0601: PPGSGKTILA RAAAKYFEEQ KDLLAHVILV SCSTLALEKV QHIHHVLSSV IAEGLEHAPS VIILDDLDSI ISSSSDTEGT QASVGVTMLT KFLTDVIDDY
0701: GEYRNSSCGI GPLAFVASVQ SLEQIPQTLS SSGRFDFHVQ LAAPATSERG AILKHEIQKR LLDCSEDILL NLAAKCEGYD AYDLEILVDR AVHAAIGRHL
0801: PLESNISKYN LVKEDFTRAM HDFVPVAMRD ITKSASEGGR LGWEDVGGVT DIKNAIKEMI ELPSKFPKIF AKSPLRLRSN VLLYGPPGCG KTHIVGAAAA
0901: ACSLRFISVK GPELLNKYIG ASEQAVRDIF SKAAAAAPCI LFFDEFDSIA PKRGHDNTGV TDRVVNQFLT ELDGVEVLTG VFVFAATSRP DLLDPALLRP
1001: GRLDRLLLCD FPSPPERLEI LTVLSRKLLM ADDIDLEPIA LMTEGFSGAD LQALLSDAQL AAVHEYLNRE DKPETGTTPI ITDPLLKSIA SKTKPSVSET
1101: EKQKLYDIYS QFLDSRKSSR EAKGKRATLA
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.