Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24076 | Canola | cytosol | 99.53 | 99.53 |
| CDY36602 | Canola | cytosol | 99.53 | 99.53 |
| Bra039688.1-P | Field mustard | cytosol | 99.3 | 99.3 |
| CDY30665 | Canola | cytosol | 99.3 | 99.3 |
| CDY02494 | Canola | cytosol | 98.12 | 98.12 |
| Bra030922.1-P | Field mustard | cytosol | 98.12 | 98.12 |
| CDY25685 | Canola | cytosol | 97.89 | 97.89 |
| EES01223 | Sorghum | cytosol | 97.18 | 97.18 |
| PGSC0003DMT400023656 | Potato | cytosol | 97.42 | 96.96 |
| Zm00001d018309_P003 | Maize | cytosol | 96.95 | 96.95 |
| EES07646 | Sorghum | cytosol | 96.95 | 96.95 |
| CDX74842 | Canola | cytosol | 93.66 | 96.84 |
| Solyc06g063140.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 97.42 | 96.74 |
| CDY20470 | Canola | cytosol, plasma membrane | 96.48 | 96.48 |
| PGSC0003DMT400012446 | Potato | cytosol | 96.95 | 96.27 |
| TraesCS7A01G156800.1 | Wheat | cytosol | 96.24 | 96.24 |
| TraesCS7B01G060900.1 | Wheat | golgi | 96.24 | 96.24 |
| TraesCS7D01G157200.1 | Wheat | cytosol | 96.24 | 96.24 |
| Bra040569.1-P | Field mustard | cytosol | 97.18 | 95.61 |
| HORVU6Hr1G083150.1 | Barley | cytosol | 95.07 | 95.07 |
| TraesCS6B01G376500.1 | Wheat | golgi | 95.07 | 95.07 |
| TraesCS6D01G326400.1 | Wheat | cytosol | 95.07 | 95.07 |
| TraesCSU01G080700.1 | Wheat | cytosol | 95.07 | 95.07 |
| HORVU7Hr1G032070.1 | Barley | cytosol | 95.77 | 91.89 |
| Zm00001d052078_P003 | Maize | cytosol | 96.95 | 90.37 |
| VIT_11s0016g00230.t01 | Wine grape | cytosol | 79.34 | 79.53 |
| KRH06953 | Soybean | cytosol | 48.59 | 76.67 |
| AT1G53780.2 | Thale cress | cytosol | 82.86 | 56.94 |
| AT5G19990.1 | Thale cress | cytosol | 45.07 | 45.82 |
| AT5G20000.1 | Thale cress | cytosol | 44.6 | 45.35 |
| AT5G43010.1 | Thale cress | cytosol | 38.97 | 41.6 |
| AT1G45000.1 | Thale cress | cytosol | 38.73 | 41.35 |
| AT3G05530.1 | Thale cress | cytosol | 38.73 | 38.92 |
| AT1G09100.1 | Thale cress | cytosol | 38.5 | 38.77 |
| AT5G58290.1 | Thale cress | cytosol | 36.38 | 37.99 |
| AT4G29040.1 | Thale cress | cytosol | 38.73 | 37.25 |
| AT2G20140.1 | Thale cress | cytosol | 38.5 | 37.02 |
| AT2G03670.1 | Thale cress | cytosol | 26.76 | 18.91 |
| AT3G09840.1 | Thale cress | cytosol | 33.1 | 17.43 |
| AT5G03340.1 | Thale cress | cytosol | 32.63 | 17.16 |
| AT3G53230.1 | Thale cress | cytosol | 32.63 | 17.06 |
| AT3G01610.2 | Thale cress | nucleus | 27.93 | 14.34 |
| AT1G03000.1 | Thale cress | mitochondrion | 28.17 | 12.75 |
| AT3G56690.1 | Thale cress | cytosol, plastid | 29.58 | 12.33 |
| AT5G08470.1 | Thale cress | cytosol | 25.12 | 9.47 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.6.2.1.1 | Gene3D:2.40.50.140 | InterPro:26S_Psome_P45-like | Gene3D:3.40.50.300 | EntrezGene:841812 |
| UniProt:A0A178W3N8 | InterPro:AAA+_ATPase | ProteinID:AAF02852.1 | ProteinID:AAG51970.1 | ProteinID:AEE32992.1 | EMBL:AF123390 |
| ArrayExpress:AT1G53750 | EnsemblPlantsGene:AT1G53750 | RefSeq:AT1G53750 | TAIR:AT1G53750 | RefSeq:AT1G53750-TAIR-G | EnsemblPlants:AT1G53750.1 |
| TAIR:AT1G53750.1 | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | EMBL:AY062860 | EMBL:BT000069 | ncoils:Coil |
| GO:GO:0000166 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006139 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016787 |
| GO:GO:0017025 | GO:GO:0019538 | GO:GO:0030163 | GO:GO:0030433 | GO:GO:0031595 | GO:GO:0031597 |
| GO:GO:0036402 | GO:GO:0045899 | GO:GO:1901800 | RefSeq:NP_175778.1 | ProteinID:OAP12674.1 | InterPro:P-loop_NTPase |
| PFAM:PF00004 | PO:PO:0000293 | PO:PO:0025195 | ScanProsite:PS00674 | PANTHER:PTHR23073 | PANTHER:PTHR23073:SF60 |
| UniProt:Q9SSB5 | Symbol:RPT1A | SMART:SM00382 | SUPFAM:SSF52540 | TIGRFAMs:TIGR01242 | UniParc:UPI0000132378 |
Description
RPT1ARPT1A [Source:UniProtKB/TrEMBL;Acc:A0A178W3N8]
Coordinates
chr1:-:20065394..20068500
Molecular Weight (calculated)
47806.0 Da
IEP (calculated)
6.560
GRAVY (calculated)
-0.400
Length
426 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRDIEDEIR DEKNPRPLDE DDIALLKTYG LGPYSAPIKK VEKEIKDLAK KINDLCGIKE SDTGLAPPSQ WDLVSDKQMM QEEQPLQVAR CTKIISPNTE
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.