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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT5G19990.1 Thale cress cytosol 96.66 96.66
CDX70903 Canola cytosol 95.7 96.39
CDY35832 Canola cytosol 96.18 96.18
Bra002279.1-P Field mustard cytosol 96.18 96.18
Bra006529.1-P Field mustard cytosol 95.94 95.94
GSMUA_Achr7P09950_001 Banana cytosol 89.02 92.56
KRH44668 Soybean cytosol, mitochondrion, nucleus 91.89 92.11
KRH46990 Soybean nucleus 91.17 91.39
Solyc05g018590.2.1 Tomato nucleus 90.93 91.37
VIT_09s0002g05800.t01 Wine grape cytosol 90.69 91.13
Solyc05g018570.2.1 Tomato cytosol, extracellular, nucleus, plastid 90.45 90.89
TraesCS6D01G166700.1 Wheat cytosol, golgi 90.21 90.43
TraesCS6B01G207100.1 Wheat cytosol 90.21 90.43
TraesCS6A01G177600.1 Wheat cytosol 90.21 90.43
Zm00001d053616_P002 Maize cytosol 90.93 90.28
Zm00001d016439_P003 Maize cytosol, extracellular, plasma membrane 90.69 90.05
Os02t0205300-01 Rice cytosol 90.93 89.86
TraesCS7D01G350300.1 Wheat cytosol 90.45 89.6
TraesCS7B01G254400.1 Wheat cytosol 90.45 89.6
TraesCS7A01G372600.1 Wheat cytosol 90.45 89.6
HORVU7Hr1G084550.2 Barley cytosol 90.45 89.6
Os06t0600100-01 Rice plasma membrane 86.16 85.34
EER88603 Sorghum cytosol 84.25 84.25
HORVU6Hr1G036990.7 Barley cytosol 90.21 81.82
PGSC0003DMT400038718 Potato cytosol 80.19 77.6
CDX88865 Canola cytosol, extracellular 91.89 61.21
CDY42324 Canola cytosol, extracellular 95.23 55.65
CDY44958 Canola cytosol, plasma membrane 95.7 55.62
Bra020079.1-P Field mustard cytosol 95.47 55.48
AT1G53750.1 Thale cress cytosol 45.35 44.6
AT5G43010.1 Thale cress cytosol 42.0 44.11
AT1G45000.1 Thale cress cytosol 41.53 43.61
AT3G05530.1 Thale cress cytosol 40.81 40.33
AT1G09100.1 Thale cress cytosol 40.33 39.95
AT5G58290.1 Thale cress cytosol 38.42 39.46
AT2G20140.1 Thale cress cytosol 41.05 38.83
AT4G29040.1 Thale cress cytosol 41.05 38.83
AT1G53780.2 Thale cress cytosol 44.87 30.32
AT2G03670.1 Thale cress cytosol 26.97 18.74
AT3G09840.1 Thale cress cytosol 29.12 15.08
AT5G03340.1 Thale cress cytosol 29.12 15.06
AT3G53230.1 Thale cress cytosol 29.12 14.97
AT3G01610.2 Thale cress nucleus 26.97 13.61
AT1G03000.1 Thale cress mitochondrion 27.45 12.22
AT3G56690.1 Thale cress cytosol, plastid 29.12 11.94
AT5G08470.1 Thale cress cytosol 27.21 10.09
Os06t0600301-00 Rice plasma membrane 1.67 3.1
Bra006530.1-P Field mustard cytosol, nucleus, plastid 0.0 0.0
Protein Annotations
Gene3D:1.10.8.60MapMan:19.2.6.2.1.6Gene3D:2.40.50.140InterPro:26S_Psome_P45-likeGene3D:3.40.50.300EntrezGene:832121
EntrezGene:832122UniProt:A0A178U901InterPro:AAA+_ATPaseProteinID:AED92778.1EMBL:AF296836EMBL:AK226206
ProteinID:ANM69328.1ArrayExpress:AT5G20000EnsemblPlantsGene:AT5G20000RefSeq:AT5G20000TAIR:AT5G20000RefSeq:AT5G20000-TAIR-G
EnsemblPlants:AT5G20000.1TAIR:AT5G20000.1InterPro:ATPase_AAA_CSInterPro:ATPase_AAA_coreEMBL:AY039965EMBL:AY079403
EMBL:AY087503Unigene:At.51251ncoils:CoilGO:GO:0000166GO:GO:0000502GO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0005829GO:GO:0006139GO:GO:0006950
GO:GO:0008150GO:GO:0008152GO:GO:0008540GO:GO:0009056GO:GO:0009058GO:GO:0009987
GO:GO:0016043GO:GO:0016787GO:GO:0017025GO:GO:0019538GO:GO:0030163GO:GO:0030433
GO:GO:0031595GO:GO:0031597GO:GO:0036402GO:GO:0045899GO:GO:1901800RefSeq:NP_001331019.1
RefSeq:NP_197500.1ProteinID:OAO90418.1InterPro:P-loop_NTPasePFAM:PF00004PO:PO:0000293PO:PO:0001016
PO:PO:0001017PO:PO:0025195PO:PO:0025281ScanProsite:PS00674PANTHER:PTHR23073PANTHER:PTHR23073:SF57
UniProt:Q94BQ2SMART:SM00382SUPFAM:SSF52540TIGRFAMs:TIGR01242UniParc:UPI00000A3D47SEG:seg
Description
RPT6B26S proteasome regulatory subunit 8 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q94BQ2]
Coordinates
chr5:+:6756633..6759800
Molecular Weight (calculated)
47159.7 Da
IEP (calculated)
8.958
GRAVY (calculated)
-0.358
Length
419 amino acids
Sequence
(BLAST)
001: MAAVGVEARP PVTAMEETCN VKGAAAKQGE GLNKYYLQHL DELQRLQREK SYNLNRLEAQ RNELNSRVRM LREELQLLQE PGSYVGEVVK VMGKNKVLVK
101: VHPEGKYVVD IDKSIDITKL TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEESRFD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWK
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.