Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU6Hr1G036810.5 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G19990.1 | HORVU6Hr1G036810.5 | AT5G19960.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G177600.1 | Wheat | cytosol | 90.48 | 100.0 |
| TraesCS6B01G207100.1 | Wheat | cytosol | 90.48 | 100.0 |
| TraesCS6D01G166700.1 | Wheat | cytosol, golgi | 90.48 | 100.0 |
| Zm00001d053616_P002 | Maize | cytosol | 88.53 | 96.92 |
| Zm00001d016439_P003 | Maize | cytosol, extracellular, plasma membrane | 88.31 | 96.68 |
| Os02t0205300-01 | Rice | cytosol | 88.53 | 96.46 |
| HORVU7Hr1G084550.2 | Barley | cytosol | 86.36 | 94.33 |
| VIT_04s0008g04690.t01 | Wine grape | cytosol | 83.98 | 92.38 |
| VIT_09s0002g05800.t01 | Wine grape | cytosol | 83.33 | 92.33 |
| CDX70903 | Canola | cytosol | 83.12 | 92.31 |
| GSMUA_Achr10P... | Banana | cytosol | 83.77 | 92.14 |
| CDY35832 | Canola | cytosol | 83.55 | 92.12 |
| AT5G19990.1 | Thale cress | cytosol | 83.55 | 92.12 |
| Bra002279.1-P | Field mustard | cytosol | 83.12 | 91.65 |
| KRH44668 | Soybean | cytosol, mitochondrion, nucleus | 82.68 | 91.39 |
| Bra006529.1-P | Field mustard | cytosol | 82.68 | 91.17 |
| Solyc05g018590.2.1 | Tomato | nucleus | 82.25 | 91.13 |
| Solyc05g018570.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 82.25 | 91.13 |
| KRH46990 | Soybean | nucleus | 82.25 | 90.91 |
| AT5G20000.1 | Thale cress | cytosol | 81.82 | 90.21 |
| PGSC0003DMT400038718 | Potato | cytosol | 73.16 | 78.06 |
| CDX88865 | Canola | cytosol, extracellular | 79.44 | 58.35 |
| CDY42324 | Canola | cytosol, extracellular | 82.9 | 53.42 |
| CDY44958 | Canola | cytosol, plasma membrane | 83.12 | 53.26 |
| Bra020079.1-P | Field mustard | cytosol | 82.9 | 53.12 |
| HORVU3Hr1G067470.2 | Barley | cytosol | 24.46 | 49.78 |
| HORVU6Hr1G083150.1 | Barley | cytosol | 41.77 | 45.31 |
| HORVU7Hr1G032070.1 | Barley | cytosol | 41.77 | 43.47 |
| HORVU6Hr1G087650.1 | Barley | cytosol, plasma membrane | 35.5 | 42.71 |
| HORVU6Hr1G032570.5 | Barley | cytosol | 37.45 | 42.3 |
| HORVU7Hr1G119300.13 | Barley | cytosol | 36.36 | 41.79 |
| HORVU2Hr1G107280.1 | Barley | cytosol | 33.33 | 41.62 |
| HORVU7Hr1G090380.3 | Barley | cytosol | 37.45 | 39.68 |
| HORVU4Hr1G055060.1 | Barley | cytosol | 37.66 | 38.67 |
| HORVU2Hr1G014770.2 | Barley | cytosol, plastid | 36.8 | 38.55 |
| HORVU2Hr1G014000.1 | Barley | cytosol | 34.2 | 38.54 |
| HORVU6Hr1G049800.1 | Barley | cytosol | 3.68 | 30.36 |
| HORVU3Hr1G095530.3 | Barley | mitochondrion, plastid | 14.07 | 25.9 |
| HORVU1Hr1G091080.1 | Barley | mitochondrion, plastid | 13.85 | 25.5 |
| HORVU2Hr1G086170.2 | Barley | cytosol | 26.41 | 21.44 |
| HORVU0Hr1G038060.2 | Barley | cytosol | 24.46 | 21.36 |
| HORVU0Hr1G013350.2 | Barley | cytosol | 11.9 | 17.86 |
| HORVU7Hr1G002880.2 | Barley | plastid | 27.49 | 15.86 |
| HORVU4Hr1G071960.2 | Barley | cytosol | 27.06 | 15.3 |
| HORVU4Hr1G072010.4 | Barley | cytosol | 26.84 | 15.21 |
| HORVU2Hr1G011690.1 | Barley | cytosol | 26.84 | 15.05 |
| HORVU0Hr1G006340.1 | Barley | cytosol | 25.54 | 14.97 |
| HORVU1Hr1G049910.1 | Barley | cytosol | 26.19 | 14.86 |
| HORVU1Hr1G060370.1 | Barley | cytosol | 25.76 | 14.75 |
| HORVU1Hr1G060340.2 | Barley | cytosol | 25.76 | 14.64 |
| HORVU3Hr1G029450.1 | Barley | cytosol | 25.54 | 14.6 |
| HORVU3Hr1G029440.1 | Barley | cytosol | 25.54 | 14.5 |
| HORVU2Hr1G104530.9 | Barley | cytosol | 24.24 | 12.27 |
| HORVU4Hr1G016200.10 | Barley | cytosol, plastid | 25.76 | 11.83 |
| HORVU1Hr1G015310.16 | Barley | cytosol, plastid | 25.54 | 11.74 |
| HORVU5Hr1G069560.1 | Barley | cytosol | 4.76 | 10.38 |
| HORVU7Hr1G058410.7 | Barley | cytosol, peroxisome | 24.24 | 10.12 |
| HORVU5Hr1G078590.8 | Barley | plastid | 22.94 | 9.38 |
| HORVU6Hr1G053620.1 | Barley | cytosol | 5.63 | 7.24 |
| HORVU3Hr1G029660.1 | Barley | cytosol, peroxisome | 0.0 | 0.0 |
| Bra006530.1-P | Field mustard | cytosol, nucleus, plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.6.2.1.6 | Gene3D:2.40.50.140 | InterPro:26S_Psome_P45-like | Gene3D:3.40.50.300 | UniProt:A0A287TY05 |
| InterPro:AAA+_ATPase | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0030163 | EnsemblPlantsGene:HORVU6Hr1G036990 | EnsemblPlants:HORVU6Hr1G036990.7 | InterPro:P-loop_NTPase | PFAM:PF00004 | ScanProsite:PS00674 |
| PANTHER:PTHR23073 | PANTHER:PTHR23073:SF57 | SMART:SM00382 | SUPFAM:SSF52540 | TIGRFAMs:TIGR01242 | UniParc:UPI000B46FADC |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:184920695..184924649
Molecular Weight (calculated)
52218.8 Da
IEP (calculated)
10.336
GRAVY (calculated)
-0.530
Length
462 amino acids
Sequence
(BLAST)
(BLAST)
001: SPNNPLRFRP EEKKKTFFFR RKKKRPRNKA FVERREKKPN QTPGMATVAM DISKPPPAAS GDESAKGARG GGEGLRQYYL QHIHDLQLQI RQKTHNLNRL
101: EAQRNDLNSR VRMLREELQL LQEPGSYVGE VVKVMGKSKV LVKVHPEGKY VVDIDKSIDI TKITPSTRVA LRNDSYMLHL VLPSKVDPLV NLMKVEKVPD
201: STYDMIGGLD QQIKEIKEVI ELPIKHPELF ESLGIAQPKG VLLYGPPGTG KTLLARAVAH HTDCTFIRVS GSELVQKYIG EGSRMVRELF VMAREHAPSI
301: IFMDEIDSIG SARMESGTGN GDSEVQRTML ELLNQLDGFE ASNKIKVLMA TNRIDILDQA LLRPGRIDRK IEFPNPNEDS RGDILKIHSR RMNLMRGIDL
401: KKIAGKMNGA SGAELKAVCT EAGMFALRER RVHVTQEDFE MAVAKVMKKD NEKNMSLRKL WK
101: EAQRNDLNSR VRMLREELQL LQEPGSYVGE VVKVMGKSKV LVKVHPEGKY VVDIDKSIDI TKITPSTRVA LRNDSYMLHL VLPSKVDPLV NLMKVEKVPD
201: STYDMIGGLD QQIKEIKEVI ELPIKHPELF ESLGIAQPKG VLLYGPPGTG KTLLARAVAH HTDCTFIRVS GSELVQKYIG EGSRMVRELF VMAREHAPSI
301: IFMDEIDSIG SARMESGTGN GDSEVQRTML ELLNQLDGFE ASNKIKVLMA TNRIDILDQA LLRPGRIDRK IEFPNPNEDS RGDILKIHSR RMNLMRGIDL
401: KKIAGKMNGA SGAELKAVCT EAGMFALRER RVHVTQEDFE MAVAKVMKKD NEKNMSLRKL WK
001: MAAVGVDSRR PETAMEETCN VKGAAAKQGE GLKQYYLQHI HELQRQLRQK TNNLNRLEAQ RNELNSRVRM LREELQLLQE PGSYVGEVVK VMGKNKVLVK
101: VHPEGKYVVD IDKSIDITKI TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEESRFD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWK
101: VHPEGKYVVD IDKSIDITKI TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEESRFD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWK
Arabidopsis Description
RPT6A26S proteasome regulatory subunit 8 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9C5U3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.