Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU6Hr1G087650.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G43010.1 | HORVU6Hr1G087650.1 | AT3G05530.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G149500.1 | Wheat | cytosol | 84.11 | 95.56 |
| TraesCS6B01G188500.1 | Wheat | cytosol | 93.4 | 95.5 |
| TraesCS6A01G162700.2 | Wheat | cytosol, golgi | 93.15 | 95.25 |
| Zm00001d053649_P002 | Maize | cytosol, mitochondrion | 91.69 | 93.75 |
| EES06471 | Sorghum | cytosol | 91.69 | 93.75 |
| Zm00001d015788_P001 | Maize | plasma membrane | 91.2 | 93.25 |
| Os02t0199900-01 | Rice | nucleus, plasma membrane | 90.71 | 92.75 |
| VIT_03s0038g04350.t01 | Wine grape | cytosol | 87.53 | 89.72 |
| VIT_18s0001g13090.t01 | Wine grape | cytosol | 87.29 | 89.7 |
| KRH51796 | Soybean | cytosol | 86.8 | 89.2 |
| Solyc01g109940.2.1 | Tomato | nucleus | 86.8 | 89.2 |
| KRH61120 | Soybean | endoplasmic reticulum | 86.8 | 89.2 |
| PGSC0003DMT400079514 | Potato | cytosol | 86.55 | 88.94 |
| KRH05868 | Soybean | cytosol, nucleus | 86.55 | 88.72 |
| GSMUA_AchrUn_... | Banana | cytosol | 86.8 | 88.53 |
| KRH15139 | Soybean | cytosol, endoplasmic reticulum, nucleus | 86.31 | 88.47 |
| GSMUA_Achr4P03720_001 | Banana | cytosol | 85.82 | 88.19 |
| AT1G45000.1 | Thale cress | cytosol | 85.82 | 87.97 |
| AT5G43010.1 | Thale cress | cytosol | 85.33 | 87.47 |
| CDX71534 | Canola | cytosol | 85.33 | 87.47 |
| Bra033655.1-P | Field mustard | cytosol | 85.33 | 87.47 |
| CDY22373 | Canola | cytosol | 85.09 | 87.22 |
| CDY02428 | Canola | cytosol, extracellular | 85.09 | 87.22 |
| Bra035338.1-P | Field mustard | cytosol | 85.09 | 87.22 |
| CDY25226 | Canola | cytosol | 84.84 | 86.97 |
| GSMUA_Achr7P17620_001 | Banana | cytosol | 86.8 | 86.59 |
| HORVU7Hr1G090380.3 | Barley | cytosol | 90.22 | 84.63 |
| Solyc10g054040.1.1 | Tomato | cytosol, unclear | 79.95 | 81.95 |
| HORVU7Hr1G119300.13 | Barley | cytosol | 73.11 | 74.38 |
| CDY20370 | Canola | cytosol | 42.05 | 63.94 |
| KRH51488 | Soybean | mitochondrion | 65.53 | 63.36 |
| CDY39032 | Canola | cytosol | 36.92 | 60.16 |
| KRH00031 | Soybean | plastid | 49.39 | 58.55 |
| CDY39033 | Canola | cytosol | 56.23 | 56.65 |
| CDY20371 | Canola | cytosol, plastid | 56.23 | 52.27 |
| HORVU3Hr1G067470.2 | Barley | cytosol | 26.65 | 48.02 |
| HORVU2Hr1G107280.1 | Barley | cytosol | 37.16 | 41.08 |
| HORVU7Hr1G084550.2 | Barley | cytosol | 41.81 | 40.43 |
| HORVU6Hr1G087650.1 | Barley | cytosol, plasma membrane | 37.65 | 40.1 |
| HORVU2Hr1G014000.1 | Barley | cytosol | 38.39 | 38.29 |
| HORVU6Hr1G083150.1 | Barley | cytosol | 39.85 | 38.26 |
| HORVU6Hr1G036990.7 | Barley | cytosol | 42.3 | 37.45 |
| Bra008198.1-P | Field mustard | cytosol | 57.46 | 37.42 |
| HORVU7Hr1G032070.1 | Barley | cytosol | 40.59 | 37.39 |
| HORVU2Hr1G014770.2 | Barley | cytosol, plastid | 40.1 | 37.19 |
| HORVU4Hr1G055060.1 | Barley | cytosol | 40.59 | 36.89 |
| HORVU6Hr1G049800.1 | Barley | cytosol | 4.89 | 35.71 |
| HORVU3Hr1G095530.3 | Barley | mitochondrion, plastid | 16.38 | 26.69 |
| HORVU1Hr1G091080.1 | Barley | mitochondrion, plastid | 15.89 | 25.9 |
| HORVU0Hr1G038060.2 | Barley | cytosol | 30.32 | 23.44 |
| HORVU2Hr1G086170.2 | Barley | cytosol | 29.1 | 20.91 |
| HORVU0Hr1G013350.2 | Barley | cytosol | 13.2 | 17.53 |
| HORVU0Hr1G006340.1 | Barley | cytosol | 32.27 | 16.75 |
| HORVU4Hr1G072010.4 | Barley | cytosol | 32.76 | 16.44 |
| HORVU3Hr1G029450.1 | Barley | cytosol | 32.27 | 16.34 |
| HORVU4Hr1G071960.2 | Barley | cytosol | 32.52 | 16.28 |
| HORVU1Hr1G060370.1 | Barley | cytosol | 32.03 | 16.23 |
| HORVU3Hr1G029440.1 | Barley | cytosol | 32.27 | 16.22 |
| HORVU1Hr1G060340.2 | Barley | cytosol | 32.03 | 16.11 |
| HORVU1Hr1G049910.1 | Barley | cytosol | 32.03 | 16.09 |
| HORVU2Hr1G011690.1 | Barley | cytosol | 30.07 | 14.93 |
| HORVU7Hr1G002880.2 | Barley | plastid | 28.61 | 14.61 |
| HORVU5Hr1G069560.1 | Barley | cytosol | 6.85 | 13.21 |
| HORVU1Hr1G015310.16 | Barley | cytosol, plastid | 29.1 | 11.84 |
| HORVU4Hr1G016200.10 | Barley | cytosol, plastid | 28.85 | 11.73 |
| HORVU2Hr1G104530.9 | Barley | cytosol | 25.92 | 11.61 |
| HORVU6Hr1G053620.1 | Barley | cytosol | 9.05 | 10.31 |
| HORVU7Hr1G058410.7 | Barley | cytosol, peroxisome | 26.41 | 9.76 |
| HORVU5Hr1G078590.8 | Barley | plastid | 24.45 | 8.85 |
| HORVU3Hr1G029660.1 | Barley | cytosol, peroxisome | 0.73 | 8.82 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.6.2.1.4 | Gene3D:2.40.50.140 | InterPro:26S_Psome_P45-like | Gene3D:3.40.50.300 | UniProt:A0A287TU78 |
| InterPro:AAA+_ATPase | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0030163 | GO:GO:0036402 | GO:GO:1901800 | EnsemblPlantsGene:HORVU6Hr1G032570 | EnsemblPlants:HORVU6Hr1G032570.5 | InterPro:P-loop_NTPase |
| PFAM:PF00004 | ScanProsite:PS00674 | InterPro:PSMC6 | PANTHER:PTHR23073 | PANTHER:PTHR23073:SF59 | SMART:SM00382 |
| SUPFAM:SSF52540 | TIGRFAMs:TIGR01242 | UniParc:UPI000B47743F | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:143256659..143261094
Molecular Weight (calculated)
45533.1 Da
IEP (calculated)
7.876
GRAVY (calculated)
-0.310
Length
409 amino acids
Sequence
(BLAST)
(BLAST)
001: DSWSSFPSCD RSKVEGQIAA AMADGEDADV ARRRTAISDY RKKLLNCREL ESRVGTVREN LKIARKGYAK TEDDLKSLQS VGQIIGEVLR PLDNERFIVK
101: ASSGPRYVVG CRSKVDKEKL TSGTRVVLDM TTLTIMRTLP REVDPVVYNM LHEDPGNVSY SAVGGLSDQI RELRESIELP LMNPELFLRV GIKPPKGVLL
201: YGPPGTGKTL LARAIASNID ANFLKIVSSA IIDKYIGESA RLIREMFGYA RDHQPCIIFM DEIDAIGGRR FSEGTSADRE IQRTLMELLN QLDGFDELGK
301: VKMIMATNRP DVLDPALLRP GRLDRKIEIP LPNEQSRTEV LKIHAAGIAK HGEIDYEAVV KLAEGFNGAD LRNVCTEAGM SAIRAERDYV VHEDFMKAVR
401: KLNDAKKLM
101: ASSGPRYVVG CRSKVDKEKL TSGTRVVLDM TTLTIMRTLP REVDPVVYNM LHEDPGNVSY SAVGGLSDQI RELRESIELP LMNPELFLRV GIKPPKGVLL
201: YGPPGTGKTL LARAIASNID ANFLKIVSSA IIDKYIGESA RLIREMFGYA RDHQPCIIFM DEIDAIGGRR FSEGTSADRE IQRTLMELLN QLDGFDELGK
301: VKMIMATNRP DVLDPALLRP GRLDRKIEIP LPNEQSRTEV LKIHAAGIAK HGEIDYEAVV KLAEGFNGAD LRNVCTEAGM SAIRAERDYV VHEDFMKAVR
401: KLNDAKKLM
001: MSDGDDAARR RTAAVTDYRK KLLHHKELES RVRTARENLR AAKKEFNKTE DDLKSLQSVG QIIGEVLRPL DNERLIVKAS SGPRYVVGCR SKVDKEKLTS
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNISYSA VGGLGDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFNYARE HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDQLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMEILK IHASGIAKHG EIDYEAIVKL GEGFNGADLR NICTEAGMFA IRAERDYVIH EDFMKAVRKL SEAKKLESSS HYNADFGKE
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNISYSA VGGLGDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFNYARE HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDQLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMEILK IHASGIAKHG EIDYEAIVKL GEGFNGADLR NICTEAGMFA IRAERDYVIH EDFMKAVRKL SEAKKLESSS HYNADFGKE
Arabidopsis Description
RPT4B26S protease regulatory subunit S10B homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9MAK9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.