Factsheet for HORVU0Hr1G006340.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G006340.1
HORVU2Hr1G080020.6
HORVU3Hr1G029440.1
HORVU3Hr1G029450.1
HORVU6Hr1G049080.7
HORVU7Hr1G068990.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09840.1	HORVU2Hr1G080020.6	AT1G71830.1	15592873
AT3G09840.1	HORVU6Hr1G049080.7	AT1G71830.1	15592873
AT3G09840.1	HORVU7Hr1G068990.2	AT1G71830.1	15592873
AT3G09840.1	HORVU2Hr1G080020.6	AT1G71830.1	16473966
AT3G09840.1	HORVU6Hr1G049080.7	AT1G71830.1	16473966
AT3G09840.1	HORVU7Hr1G068990.2	AT1G71830.1	16473966
AT3G09840.1	HORVU2Hr1G080020.6	AT1G71830.1	16621602
AT3G09840.1	HORVU6Hr1G049080.7	AT1G71830.1	16621602
AT3G09840.1	HORVU7Hr1G068990.2	AT1G71830.1	16621602
AT3G09840.1	HORVU2Hr1G080020.6	AT1G71830.1	17693538
AT3G09840.1	HORVU6Hr1G049080.7	AT1G71830.1	17693538
AT3G09840.1	HORVU7Hr1G068990.2	AT1G71830.1	17693538
AT3G09840.1	HORVU0Hr1G006340.1	AT3G09840.1	15592873
AT3G09840.1	HORVU3Hr1G029440.1	AT3G09840.1	15592873
AT3G09840.1	HORVU3Hr1G029450.1	AT3G09840.1	15592873
AT3G09840.1	HORVU0Hr1G006340.1	AT3G09840.1	16621602
AT3G09840.1	HORVU3Hr1G029440.1	AT3G09840.1	16621602
AT3G09840.1	HORVU3Hr1G029450.1	AT3G09840.1	16621602
AT3G09840.1	HORVU0Hr1G006340.1	AT3G09840.1	17693538
AT3G09840.1	HORVU3Hr1G029440.1	AT3G09840.1	17693538
AT3G09840.1	HORVU3Hr1G029450.1	AT3G09840.1	17693538

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G029660.1	Barley	cytosol, peroxisome	4.31	100.0
HORVU3Hr1G029450.1	Barley	cytosol	100.0	97.52
HORVU3Hr1G029440.1	Barley	cytosol	100.0	96.81
TraesCS3B01G154400.1	Wheat	cytosol	96.07	96.07
TraesCS3B01G171200.1	Wheat	cytosol	94.8	94.8
TraesCS3D01G153800.1	Wheat	cytosol	81.47	94.41
TraesCS1B01G259200.1	Wheat	cytosol	94.42	94.3
TraesCS3A01G144500.1	Wheat	cytosol	63.71	94.18
TraesCS3B01G172100.1	Wheat	cytosol	94.42	94.18
TraesCS1D01G399100.1	Wheat	cytosol	94.29	94.17
TraesCS1B01G419200.1	Wheat	cytosol	94.29	94.17
TraesCS3D01G154000.1	Wheat	cytosol	94.04	94.04
TraesCS3B01G172000.1	Wheat	cytosol	93.4	93.88
TraesCS1D01G248000.1	Wheat	cytosol	93.91	93.79
TraesCS3A01G145100.1	Wheat	cytosol	93.53	93.41
TraesCS3A01G145000.1	Wheat	cytosol	82.23	93.1
TraesCS3B01G171400.1	Wheat	cytosol	85.66	92.85
TraesCS3D01G153900.1	Wheat	cytosol	92.64	92.64
TraesCS3B01G171300.1	Wheat	cytosol	85.03	91.91
TraesCS6D01G360700.1	Wheat	cytosol	84.39	90.35
TraesCS1A01G248500.1	Wheat	cytosol	67.77	89.45
TraesCS5B01G323100.1	Wheat	cytosol	65.86	89.33
HORVU0Hr1G038060.2	Barley	cytosol	57.11	85.07
KRG99061	Soybean	cytosol	21.45	84.5
KRG94277	Soybean	cytosol	22.08	84.06
EER95525	Sorghum	cytosol	83.12	83.97
KXG40206	Sorghum	cytosol	83.12	83.76
VIT_08s0040g01480.t01	Wine grape	cytosol	84.52	82.63
KRG96011	Soybean	endoplasmic reticulum, mitochondrion, nucleus	84.14	82.05
KRH67721	Soybean	endoplasmic reticulum, nucleus	84.14	82.05
CDY11249	Canola	cytosol	82.99	81.95
CDX73996	Canola	cytosol	84.14	81.95
Bra001297.1-P	Field mustard	cytosol	84.14	81.95
KRH19916	Soybean	endoplasmic reticulum, mitochondrion	84.14	81.75
PGSC0003DMT400050662	Potato	cytosol	83.5	81.74
HORVU4Hr1G072010.4	Barley	cytosol	84.52	81.72
CDY07941	Canola	cytosol	83.88	81.71
AT3G09840.1	Thale cress	cytosol	83.88	81.71
CDY41316	Canola	cytosol, extracellular	83.88	81.6
CDY22207	Canola	cytosol	83.88	81.6
PGSC0003DMT400027096	Potato	cytosol	83.63	81.56
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	83.63	81.56
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	83.25	81.49
AT5G03340.1	Thale cress	cytosol	83.76	81.48
Bra034089.1-P	Field mustard	cytosol	83.76	81.48
CDY13308	Canola	cytosol	83.76	81.48
AT3G53230.1	Thale cress	cytosol	84.26	81.47
KRH32530	Soybean	endoplasmic reticulum, mitochondrion	84.01	81.43
PGSC0003DMT400031321	Potato	cytosol	83.12	81.37
Solyc06g074980.2.1	Tomato	nucleus	83.12	81.37
Bra003123.1-P	Field mustard	cytosol	83.63	81.36
CDY54618	Canola	cytosol	83.38	81.31
KRH26511	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	83.25	81.29
HORVU4Hr1G071960.2	Barley	cytosol	84.26	81.27
KRH22853	Soybean	cytosol, endoplasmic reticulum, mitochondrion	83.12	81.16
Bra029795.1-P	Field mustard	cytosol	83.25	81.09
CDY41581	Canola	cytosol	83.12	81.06
PGSC0003DMT400055513	Potato	cytosol	82.74	80.79
KRH30601	Soybean	cytosol	82.36	80.52
CDX80862	Canola	cytosol, plastid	82.61	80.47
HORVU1Hr1G049910.1	Barley	cytosol	82.87	80.22
Bra006978.1-P	Field mustard	cytosol	82.49	80.15
Solyc09g008070.2.1	Tomato	cytosol, unclear	81.85	79.83
HORVU1Hr1G060370.1	Barley	cytosol	81.73	79.8
VIT_06s0061g00340.t01	Wine grape	cytosol	77.16	79.48
HORVU1Hr1G060340.2	Barley	cytosol	81.73	79.21
CDX78154	Canola	cytosol	74.75	79.17
CDX73571	Canola	cytosol	74.11	78.6
KRH25081	Soybean	cytosol, endoplasmic reticulum, mitochondrion	71.83	78.18
CDX67563	Canola	cytosol	81.6	73.15
GSMUA_Achr3P00250_001	Banana	cytosol	18.15	72.96
HORVU5Hr1G069560.1	Barley	cytosol	19.04	70.75
HORVU6Hr1G053620.1	Barley	cytosol	31.35	68.8
HORVU2Hr1G011690.1	Barley	cytosol	65.99	63.11
KRH45638	Soybean	cytosol	25.63	62.93
Bra005733.1-P	Field mustard	cytosol	83.12	59.33
HORVU2Hr1G086170.2	Barley	cytosol	29.7	41.12
HORVU3Hr1G067470.2	Barley	cytosol	11.04	38.33
HORVU6Hr1G049800.1	Barley	cytosol	2.41	33.93
HORVU6Hr1G083150.1	Barley	cytosol	17.64	32.63
HORVU6Hr1G032570.5	Barley	cytosol	16.75	32.27
HORVU2Hr1G107280.1	Barley	cytosol	15.1	32.16
HORVU7Hr1G119300.13	Barley	cytosol	16.37	32.09
HORVU6Hr1G087650.1	Barley	cytosol, plasma membrane	15.48	31.77
HORVU7Hr1G032070.1	Barley	cytosol	17.77	31.53
HORVU2Hr1G014000.1	Barley	cytosol	16.24	31.22
HORVU7Hr1G090380.3	Barley	cytosol	17.13	30.96
HORVU7Hr1G002880.2	Barley	plastid	31.47	30.96
HORVU0Hr1G013350.2	Barley	cytosol	11.04	28.25
HORVU7Hr1G084550.2	Barley	cytosol	14.97	27.9
HORVU4Hr1G055060.1	Barley	cytosol	15.48	27.11
HORVU2Hr1G014770.2	Barley	cytosol, plastid	14.72	26.3
HORVU4Hr1G016200.10	Barley	cytosol, plastid	33.38	26.14
HORVU1Hr1G015310.16	Barley	cytosol, plastid	32.87	25.77
HORVU6Hr1G036990.7	Barley	cytosol	14.97	25.54
HORVU2Hr1G104530.9	Barley	cytosol	27.28	23.55
HORVU3Hr1G095530.3	Barley	mitochondrion, plastid	6.47	20.32
HORVU1Hr1G091080.1	Barley	mitochondrion, plastid	6.22	19.52
HORVU7Hr1G058410.7	Barley	cytosol, peroxisome	23.6	16.8
HORVU5Hr1G078590.8	Barley	plastid	23.6	16.46

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	UniProt:A0A287DWX2
InterPro:AAA+_ATPase	InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf
InterPro:CDC4_N-term_subdom	InterPro:Cdc48_dom2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:HORVU0Hr1G006340	EnsemblPlants:HORVU0Hr1G006340.1	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF02359	PFAM:PF02933	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF122	SMART:SM00382
SMART:SM01072	SMART:SM01073	SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	TIGRFAMs:TIGR01243
UniParc:UPI000B47FAEA	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchrUn:-:34637690..34640056

Molecular Weight (calculated)

87302.4 Da

IEP (calculated)

5.019

GRAVY (calculated)

-0.316

Length

788 amino acids

Sequence
(BLAST)

001: MAITASSKKA ANRLVVEDAS TNDDNSVCTL HPDTMEKLSL FKGDTVLLKG KRRHSTVCMA LPDDTCEEHK MRINKVARSN LRVRIADVVS VHLCHDVKYA
101: RRVHILPLDD TVEGIAGNLF DAYLKPYFVD AFRPVHKGDL FLVRGGMRSV EFKVMEIDPA ADYCIVMPDT EIFCEGEPVK REDEERLDDV GYDDVGGMGK
201: PLTQIRELVE LPLRHPQIFK SIGVKPPKGI LLYGPPGSGK TLIARAVANE TGAFFFLING PEIMSKMAGE SESNLRKAFE EAEKNAPSII FIDEIDSIAP
301: NREKTHGEVE RRIVSQLLTL MDGMKARAHV IVMGATNRPN SIDPALRRFG RFDREIDIGV PDEVGRLEVL RIHTKNMKLD EEVNLEVIAK DTHGYVGADL
401: AALCTEAALQ CIREKMDVID LEDDTIDAEI LNSMAVTNDH LKTALVGTNP SALRETVVEV PNVSWNDVGG LDGVKRELQE TVQYPVEHPE KFEKFGMSPS
501: KGVLFYGPPG CGKTLLAKAI ANECQANFIS IKGPELLTMW FGESEANVRE IFDKARQSAP CVLFFDELDS IATQRGGRMG DAGGAADRVL NQLLTEMDGM
601: NAKKTVFIIG ATNRPDIIDS ALLRPGRLDQ LIYIPLPDEA SRHQIFKACL RKSPVAKDVD LGALARFTAG FSGADITEIC QRACKYAIRE DIEKDMERQR
701: MGQDTMEPDG GQEEEAAEIK AAHFEESMKY ARRSVSDADV RKYRAFAQTL QQSRGFGTEF RFPAQPHAAE AAVHTSAAAD EDEDDLYK

Best Arabidopsis Sequence Match ( AT3G01610.1 )
(BLAST)

001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE

Arabidopsis Description

CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.