Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY54618 | Canola | cytosol | 99.5 | 99.5 |
| Bra029795.1-P | Field mustard | cytosol | 99.38 | 99.26 |
| CDY22207 | Canola | cytosol | 98.89 | 98.64 |
| CDY41316 | Canola | cytosol, extracellular | 98.89 | 98.64 |
| CDX73996 | Canola | cytosol | 98.64 | 98.52 |
| CDY07941 | Canola | cytosol | 98.51 | 98.39 |
| AT3G09840.1 | Thale cress | cytosol | 98.27 | 98.15 |
| CDY11249 | Canola | cytosol | 93.19 | 94.36 |
| CDX80862 | Canola | cytosol, plastid | 93.07 | 92.95 |
| PGSC0003DMT400027096 | Potato | cytosol | 92.7 | 92.7 |
| Solyc10g084050.1.1 | Tomato | cytosol, nucleus, plastid, unclear | 92.57 | 92.57 |
| VIT_08s0040g01480.t01 | Wine grape | cytosol | 92.33 | 92.56 |
| PGSC0003DMT400031321 | Potato | cytosol | 92.2 | 92.55 |
| Solyc06g074980.2.1 | Tomato | nucleus | 92.2 | 92.55 |
| PGSC0003DMT400055513 | Potato | cytosol | 92.33 | 92.44 |
| PGSC0003DMT400050662 | Potato | cytosol | 91.34 | 91.68 |
| Solyc11g069720.1.1 | Tomato | cytosol, extracellular, nucleus, plastid | 91.34 | 91.68 |
| GSMUA_Achr5P15500_001 | Banana | cytosol, plasma membrane | 91.58 | 91.47 |
| Zm00001d027707_P001 | Maize | cytosol, plasma membrane | 90.97 | 91.08 |
| Os03t0151800-02 | Rice | cytosol, extracellular, nucleus, plasma membrane, plastid | 91.09 | 90.98 |
| Solyc09g008070.2.1 | Tomato | cytosol, unclear | 90.97 | 90.97 |
| GSMUA_Achr4P26800_001 | Banana | cytosol | 90.97 | 90.85 |
| Zm00001d048409_P001 | Maize | cytosol | 90.35 | 90.8 |
| CDY13308 | Canola | cytosol | 90.84 | 90.62 |
| Zm00001d014124_P001 | Maize | cytosol, plasma membrane | 90.84 | 90.51 |
| Zm00001d032859_P006 | Maize | plasma membrane | 90.72 | 90.49 |
| CDX78154 | Canola | cytosol | 81.68 | 88.71 |
| CDX73571 | Canola | cytosol | 80.82 | 87.89 |
| Os10t0442600-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 21.16 | 87.69 |
| GSMUA_Achr9P23550_001 | Banana | mitochondrion | 87.13 | 87.34 |
| TraesCSU01G001000.1 | Wheat | cytosol | 86.51 | 87.05 |
| VIT_06s0061g00340.t01 | Wine grape | cytosol | 79.58 | 84.05 |
| TraesCS3B01G154400.1 | Wheat | cytosol | 81.81 | 83.88 |
| TraesCS1B01G419200.1 | Wheat | cytosol | 81.31 | 83.27 |
| HORVU0Hr1G006340.1 | Barley | cytosol | 81.06 | 83.12 |
| TraesCS3B01G171200.1 | Wheat | cytosol | 80.82 | 82.87 |
| TraesCS3A01G145100.1 | Wheat | cytosol | 80.82 | 82.76 |
| TraesCS3A01G144500.1 | Wheat | cytosol | 54.58 | 82.74 |
| TraesCS3B01G171400.1 | Wheat | cytosol | 74.38 | 82.67 |
| TraesCS1B01G259200.1 | Wheat | cytosol | 80.69 | 82.64 |
| TraesCS3B01G172100.1 | Wheat | cytosol | 80.69 | 82.53 |
| TraesCS3B01G172000.1 | Wheat | cytosol | 79.95 | 82.4 |
| KXG40206 | Sorghum | cytosol | 79.7 | 82.35 |
| EER95525 | Sorghum | cytosol | 79.46 | 82.31 |
| TraesCS3A01G145000.1 | Wheat | cytosol | 70.67 | 82.04 |
| CDX67563 | Canola | cytosol | 88.61 | 81.46 |
| HORVU3Hr1G029450.1 | Barley | cytosol | 81.06 | 81.06 |
| HORVU3Hr1G029440.1 | Barley | cytosol | 81.06 | 80.47 |
| TraesCS3B01G171300.1 | Wheat | cytosol | 72.03 | 79.84 |
| TraesCS1A01G248500.1 | Wheat | cytosol | 58.66 | 79.4 |
| TraesCS5B01G323100.1 | Wheat | cytosol | 57.05 | 79.35 |
| Zm00001d032117_P001 | Maize | cytosol | 27.1 | 68.44 |
| CDY25624 | Canola | cytosol | 14.73 | 47.41 |
| CDY20370 | Canola | cytosol | 12.62 | 37.92 |
| CDX74308 | Canola | mitochondrion | 32.67 | 37.39 |
| CDY04161 | Canola | cytosol | 27.72 | 37.15 |
| CDY39032 | Canola | cytosol | 11.51 | 37.05 |
| CDX84794 | Canola | cytosol | 31.81 | 34.59 |
| CDY23949 | Canola | cytosol | 30.94 | 34.48 |
| CDX71534 | Canola | cytosol | 16.96 | 34.34 |
| CDY22373 | Canola | cytosol | 16.96 | 34.34 |
| CDX91939 | Canola | cytosol, mitochondrion | 32.8 | 34.11 |
| CDY02428 | Canola | cytosol, extracellular | 16.71 | 33.83 |
| CDY25226 | Canola | cytosol | 16.71 | 33.83 |
| CDY30665 | Canola | cytosol | 17.45 | 33.1 |
| CDX74842 | Canola | cytosol | 16.83 | 33.01 |
| CDY24076 | Canola | cytosol | 17.33 | 32.86 |
| CDY36602 | Canola | cytosol | 17.33 | 32.86 |
| CDY02494 | Canola | cytosol | 17.2 | 32.63 |
| CDY25685 | Canola | cytosol | 17.2 | 32.63 |
| CDY45794 | Canola | nucleus | 32.05 | 32.5 |
| CDY20470 | Canola | cytosol, plasma membrane | 16.96 | 32.16 |
| CDY33111 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 27.85 | 31.42 |
| CDX88666 | Canola | cytosol | 15.22 | 30.45 |
| CDY02806 | Canola | cytosol | 15.22 | 30.45 |
| CDY32714 | Canola | cytosol | 15.22 | 30.45 |
| CDY32995 | Canola | cytosol, extracellular | 15.22 | 30.45 |
| CDY43865 | Canola | cytosol | 15.22 | 30.45 |
| CDY58566 | Canola | cytosol | 15.22 | 30.45 |
| CDY39033 | Canola | cytosol | 15.1 | 30.05 |
| CDX89698 | Canola | endoplasmic reticulum | 25.62 | 29.78 |
| CDY35832 | Canola | cytosol | 15.22 | 29.36 |
| CDY06847 | Canola | cytosol | 16.09 | 29.35 |
| CDX70903 | Canola | cytosol | 15.1 | 29.33 |
| CDX92914 | Canola | cytosol, extracellular | 15.97 | 29.12 |
| CDY35245 | Canola | cytosol | 15.97 | 29.12 |
| CDY05176 | Canola | cytosol | 15.22 | 29.01 |
| CDY18782 | Canola | cytosol | 15.22 | 29.01 |
| CDY18801 | Canola | cytosol | 15.22 | 29.01 |
| CDY27761 | Canola | cytosol | 15.22 | 29.01 |
| CDX74142 | Canola | cytosol | 15.1 | 28.77 |
| CDY40714 | Canola | cytosol | 15.1 | 28.77 |
| CDX97472 | Canola | cytosol | 15.84 | 28.76 |
| CDY14224 | Canola | cytosol | 15.84 | 28.76 |
| CDY30663 | Canola | cytosol | 15.35 | 28.7 |
| CDX72118 | Canola | plastid | 33.42 | 28.6 |
| CDY08201 | Canola | cytosol | 12.5 | 28.45 |
| CDY20371 | Canola | cytosol, plastid | 15.1 | 27.73 |
| CDX89923 | Canola | cytosol | 25.37 | 26.83 |
| CDY56774 | Canola | plastid | 33.17 | 26.33 |
| CDY59958 | Canola | cytosol | 11.51 | 25.55 |
| CDY37450 | Canola | mitochondrion | 28.22 | 24.65 |
| CDY32490 | Canola | mitochondrion | 28.22 | 24.6 |
| CDX88865 | Canola | cytosol, extracellular | 15.97 | 20.51 |
| CDY02982 | Canola | cytosol | 28.84 | 19.76 |
| CDY18139 | Canola | extracellular, vacuole | 7.18 | 19.14 |
| CDX69950 | Canola | cytosol | 25.62 | 18.96 |
| CDY62119 | Canola | cytosol | 25.62 | 18.96 |
| CDY42324 | Canola | cytosol, extracellular | 15.97 | 17.99 |
| CDY44958 | Canola | cytosol, plasma membrane | 15.97 | 17.89 |
| CDY69655 | Canola | cytosol, nucleus | 0.99 | 3.52 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.4.2.1 | Gene3D:2.40.40.20 | Gene3D:3.10.330.10 | Gene3D:3.40.50.300 | GO:A0A078HV46 |
| UniProt:A0A078HV46 | InterPro:AAA+_ATPase | InterPro:AAA_ATPase_CDC48 | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | InterPro:Asp_de-COase-like_dom_sf |
| InterPro:CDC48_domain_2-like_sf | InterPro:CDC4_N-term_subdom | EnsemblPlants:CDY41581 | ProteinID:CDY41581 | ProteinID:CDY41581.1 | InterPro:Cdc48_dom2 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 |
| EnsemblPlantsGene:GSBRNA2T00073226001 | InterPro:P-loop_NTPase | PFAM:PF00004 | PFAM:PF02359 | PFAM:PF02933 | ScanProsite:PS00674 |
| PANTHER:PTHR23077 | PANTHER:PTHR23077:SF127 | SMART:SM00382 | SMART:SM01072 | SMART:SM01073 | SUPFAM:SSF50692 |
| SUPFAM:SSF52540 | SUPFAM:SSF54585 | TIGRFAMs:TIGR01243 | UniParc:UPI0004EC8562 | SEG:seg | : |
Description
BnaC05g43180DBnaC05g43180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HV46]
Coordinates
chrLK032501:-:53484..56955
Molecular Weight (calculated)
89526.6 Da
IEP (calculated)
4.851
GRAVY (calculated)
-0.382
Length
808 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNPAESSDS KPKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPATM EKLQLFRGDT ILIKGKKRKD TICIALADES CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV TNEHFHIALG NSNPSALRET VVEVPNVSWD DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG GGSGGDGGGA
601: ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDSALLRP GRLDQLIYIP LPDEDSRLNI FKACLRKSPI AKDVDINALA KYTQGFSGAD ITEICQRACK
701: YAIRENIEKD IEKEKRRSEN PEAMEEDMDD VSEIKAAHFE ESMKYARRSV SDADIRKYQA FAQTLQQSRG FGSEFRFETN AGSGATTGVA DPFATSAAAA
801: ADDDDLYN
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV TNEHFHIALG NSNPSALRET VVEVPNVSWD DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG GGSGGDGGGA
601: ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDSALLRP GRLDQLIYIP LPDEDSRLNI FKACLRKSPI AKDVDINALA KYTQGFSGAD ITEICQRACK
701: YAIRENIEKD IEKEKRRSEN PEAMEEDMDD VSEIKAAHFE ESMKYARRSV SDADIRKYQA FAQTLQQSRG FGSEFRFETN AGSGATTGVA DPFATSAAAA
801: ADDDDLYN
001: MSNEPESSDS KTKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPTTM EKLQLFRGDT ILIKGKKRKD TVCIALADET CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV SNEHFHTALG NSNPSALRET VVEVPNVSWE DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG NSAGDAGGAA
601: DRVLNQLLTE MDGMNAKKTV FIIGATNRPD IIDSALLRPG RLDQLIYIPL PDEDSRLNIF KACLRKSPVA KDVDVTALAK YTQGFSGADI TEICQRACKY
701: AIRENIEKDI ENERRRSQNP EAMEEDMVDD EVSEIRAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFDS TAGVGRTTGV AAADPFATSA
801: AAADDDDLYS
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV SNEHFHTALG NSNPSALRET VVEVPNVSWE DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG NSAGDAGGAA
601: DRVLNQLLTE MDGMNAKKTV FIIGATNRPD IIDSALLRPG RLDQLIYIPL PDEDSRLNIF KACLRKSPVA KDVDVTALAK YTQGFSGADI TEICQRACKY
701: AIRENIEKDI ENERRRSQNP EAMEEDMVDD EVSEIRAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFDS TAGVGRTTGV AAADPFATSA
801: AAADDDDLYS
Arabidopsis Description
CDC48ECell division control protein 48 homolog E [Source:UniProtKB/Swiss-Prot;Acc:Q9LZF6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.