Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G171400.1 | Wheat | cytosol | 88.3 | 70.56 |
| KRG99061 | Soybean | cytosol | 23.58 | 68.5 |
| TraesCS6D01G360700.1 | Wheat | cytosol | 86.57 | 68.34 |
| TraesCS3B01G154400.1 | Wheat | cytosol | 91.57 | 67.51 |
| TraesCS3B01G171300.1 | Wheat | cytosol | 83.65 | 66.67 |
| TraesCS1B01G259200.1 | Wheat | cytosol | 89.85 | 66.16 |
| TraesCS1B01G419200.1 | Wheat | cytosol | 89.67 | 66.03 |
| HORVU0Hr1G006340.1 | Barley | cytosol | 89.33 | 65.86 |
| TraesCS3B01G172100.1 | Wheat | cytosol | 89.5 | 65.82 |
| TraesCS3B01G171200.1 | Wheat | cytosol | 88.98 | 65.61 |
| TraesCS3B01G172000.1 | Wheat | cytosol | 88.12 | 65.31 |
| HORVU3Hr1G029450.1 | Barley | cytosol | 89.33 | 64.23 |
| HORVU3Hr1G029440.1 | Barley | cytosol | 89.33 | 63.76 |
| KRG94277 | Soybean | cytosol | 22.03 | 61.84 |
| EER95525 | Sorghum | cytosol | 78.66 | 58.59 |
| KXG40206 | Sorghum | cytosol | 78.49 | 58.31 |
| CDX78154 | Canola | cytosol | 74.53 | 58.2 |
| TraesCS1B01G235300.1 | Wheat | cytosol | 79.86 | 58.0 |
| KRG96011 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 80.55 | 57.92 |
| KRH67721 | Soybean | endoplasmic reticulum, nucleus | 80.55 | 57.92 |
| CDX73571 | Canola | cytosol | 74.01 | 57.87 |
| VIT_08s0040g01480.t01 | Wine grape | cytosol | 80.21 | 57.82 |
| TraesCS4B01G268400.1 | Wheat | golgi | 80.89 | 57.81 |
| KRH32530 | Soybean | endoplasmic reticulum, mitochondrion | 80.89 | 57.81 |
| CDY13308 | Canola | cytosol | 80.55 | 57.78 |
| KRH19916 | Soybean | endoplasmic reticulum, mitochondrion | 80.55 | 57.71 |
| Solyc10g084050.1.1 | Tomato | cytosol, nucleus, plastid, unclear | 80.21 | 57.67 |
| PGSC0003DMT400027096 | Potato | cytosol | 80.21 | 57.67 |
| Bra003123.1-P | Field mustard | cytosol | 80.38 | 57.65 |
| TraesCS4B01G268200.1 | Wheat | cytosol | 81.07 | 57.65 |
| CDY11249 | Canola | cytosol | 79.17 | 57.64 |
| TraesCS1B01G235500.1 | Wheat | cytosol | 79.35 | 57.62 |
| AT3G09840.1 | Thale cress | cytosol | 80.21 | 57.6 |
| PGSC0003DMT400050662 | Potato | cytosol | 79.52 | 57.39 |
| PGSC0003DMT400031321 | Potato | cytosol | 79.52 | 57.39 |
| Solyc06g074980.2.1 | Tomato | nucleus | 79.52 | 57.39 |
| KRH26511 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 79.69 | 57.37 |
| KRH22853 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 79.69 | 57.37 |
| TraesCS1B01G192400.1 | Wheat | cytosol | 79.69 | 57.3 |
| AT3G53230.1 | Thale cress | cytosol | 80.38 | 57.3 |
| AT5G03340.1 | Thale cress | cytosol | 79.86 | 57.28 |
| Solyc11g069720.1.1 | Tomato | cytosol, extracellular, nucleus, plastid | 79.35 | 57.27 |
| CDY07941 | Canola | cytosol | 79.69 | 57.23 |
| Bra001297.1-P | Field mustard | cytosol | 79.52 | 57.11 |
| CDX73996 | Canola | cytosol | 79.52 | 57.11 |
| CDY54618 | Canola | cytosol | 79.35 | 57.05 |
| CDY41581 | Canola | cytosol | 79.35 | 57.05 |
| CDY41316 | Canola | cytosol, extracellular | 79.52 | 57.04 |
| PGSC0003DMT400055513 | Potato | cytosol | 79.17 | 57.0 |
| Bra034089.1-P | Field mustard | cytosol | 79.35 | 56.91 |
| Bra029795.1-P | Field mustard | cytosol | 79.17 | 56.86 |
| KRH30601 | Soybean | cytosol | 78.83 | 56.82 |
| CDY22207 | Canola | cytosol | 79.17 | 56.79 |
| CDX80862 | Canola | cytosol, plastid | 79.0 | 56.74 |
| KRH25081 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 70.57 | 56.63 |
| Solyc09g008070.2.1 | Tomato | cytosol, unclear | 78.66 | 56.56 |
| Bra006978.1-P | Field mustard | cytosol | 78.66 | 56.35 |
| TraesCS1B01G235400.1 | Wheat | cytosol | 61.96 | 56.07 |
| VIT_06s0061g00340.t01 | Wine grape | cytosol | 72.98 | 55.42 |
| KRH45638 | Soybean | cytosol | 28.74 | 52.02 |
| CDX67563 | Canola | cytosol | 78.31 | 51.76 |
| Bra005733.1-P | Field mustard | cytosol | 79.17 | 41.67 |
| TraesCS2B01G373100.1 | Wheat | cytosol | 27.19 | 27.77 |
| TraesCS3B01G487900.1 | Wheat | mitochondrion | 29.95 | 23.36 |
| TraesCS7B01G060900.1 | Wheat | golgi | 13.77 | 18.78 |
| TraesCS6B01G376500.1 | Wheat | golgi | 13.25 | 18.08 |
| TraesCS1B01G089700.1 | Wheat | cytosol, plastid | 30.29 | 17.94 |
| TraesCS4B01G108300.1 | Wheat | plastid | 30.64 | 17.8 |
| TraesCS6B01G188500.1 | Wheat | cytosol | 12.22 | 17.75 |
| TraesCS7B01G280400.1 | Wheat | cytosol, unclear | 12.22 | 17.75 |
| TraesCS7B01G468900.1 | Wheat | cytosol | 11.53 | 16.83 |
| TraesCS3B01G457100.1 | Wheat | cytosol, golgi | 12.05 | 16.13 |
| TraesCS7B01G036400.1 | Wheat | cytosol | 11.7 | 15.93 |
| TraesCS2B01G100400.1 | Wheat | cytosol, plastid | 11.19 | 15.66 |
| TraesCS2B01G499600.1 | Wheat | cytosol | 11.19 | 15.59 |
| TraesCS2B01G494200.1 | Wheat | cytosol | 11.53 | 14.69 |
| TraesCS2B01G105700.1 | Wheat | cytosol | 11.19 | 14.48 |
| TraesCS4B01G189200.1 | Wheat | cytosol | 11.19 | 14.44 |
| TraesCS2B01G480000.3 | Wheat | mitochondrion | 23.06 | 14.36 |
| TraesCS2B01G493900.1 | Wheat | cytosol | 11.02 | 14.13 |
| TraesCS6B01G207100.1 | Wheat | cytosol | 9.81 | 13.64 |
| TraesCS7B01G254400.1 | Wheat | cytosol | 9.81 | 13.48 |
| TraesCS7B01G174800.1 | Wheat | cytosol | 18.76 | 10.58 |
| TraesCS5B01G299200.1 | Wheat | mitochondrion | 19.45 | 10.33 |
| GSMUA_Achr3P00250_001 | Banana | cytosol | 0.69 | 2.04 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.4.2.1 | Gene3D:2.40.40.20 | Gene3D:3.10.330.10 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase |
| InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | InterPro:Asp_de-COase-like_dom_sf | InterPro:CDC48_domain_2-like_sf | InterPro:CDC4_N-term_subdom | InterPro:Cdc48_dom2 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | InterPro:P-loop_NTPase | PFAM:PF00004 |
| PFAM:PF02359 | PFAM:PF02933 | ScanProsite:PS00674 | PANTHER:PTHR23077 | PANTHER:PTHR23077:SF122 | SMART:SM00382 |
| SMART:SM01072 | SMART:SM01073 | SUPFAM:SSF50692 | SUPFAM:SSF52540 | SUPFAM:SSF54585 | EnsemblPlantsGene:TraesCS5B01G323100 |
| EnsemblPlants:TraesCS5B01G323100.1 | TIGR:cd00009 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5B:-:507801188..507802933
Molecular Weight (calculated)
64018.3 Da
IEP (calculated)
6.464
GRAVY (calculated)
-0.247
Length
581 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAAASKKA ANRLVVEEAA TNDDNSVCTL HPATMDKLSI FKGDIVLLKG KRRHSTVCMA LPDDTCEGHK MRINKVARSN LRVRISDVVS VHQCHDVKYG
101: KRVHILPLDD TIEGIGGNLF DAYLKPYFVD AYRPVHKGDL FLVRGGMRSV EFKVMEMDPA VEYCIMAPDT EIFCEGEPVK REDEERLDDV GYDDVGGMGK
201: PLTLIRELVE LPLRHPQIFK SIGVKPPKGI LLYGPPGSGK TLIARAVANE TGAFFFLING PEIMSKMAGE SESNLRKAFE EAEKNAPSII FIDEIDSIAP
301: NREKTHGEVE RRIVSQLLTL MDGMKARAHV IVMGATNRPN SIDPALRRFG RFDREIDIGV PDEVGRLEVL RIHTKNMKLD KDVNLEVVAK DTHGYVGADL
401: AALYTEAALQ CIREKMDVID LEDDTIDAEI LNSMAVTNDH LKTALIGTNP SALRETVVEV PNVNWNDIGG LDSVKRELQE TVQYPVEHPE KFEKFGMSPS
501: KGVLFYGPPG CGKTLLAKAI ANECQANFIS IKGPELLTMC VKSLTRHASL RRASCSSTSL TPSQPRGEAG WGMPAVRRTG S
101: KRVHILPLDD TIEGIGGNLF DAYLKPYFVD AYRPVHKGDL FLVRGGMRSV EFKVMEMDPA VEYCIMAPDT EIFCEGEPVK REDEERLDDV GYDDVGGMGK
201: PLTLIRELVE LPLRHPQIFK SIGVKPPKGI LLYGPPGSGK TLIARAVANE TGAFFFLING PEIMSKMAGE SESNLRKAFE EAEKNAPSII FIDEIDSIAP
301: NREKTHGEVE RRIVSQLLTL MDGMKARAHV IVMGATNRPN SIDPALRRFG RFDREIDIGV PDEVGRLEVL RIHTKNMKLD KDVNLEVVAK DTHGYVGADL
401: AALYTEAALQ CIREKMDVID LEDDTIDAEI LNSMAVTNDH LKTALIGTNP SALRETVVEV PNVNWNDIGG LDSVKRELQE TVQYPVEHPE KFEKFGMSPS
501: KGVLFYGPPG CGKTLLAKAI ANECQANFIS IKGPELLTMC VKSLTRHASL RRASCSSTSL TPSQPRGEAG WGMPAVRRTG S
001: MLETESSVCD NIAGNEKWRA EAEIGGNERA LQALRELIIF PFRYPLEART LGLKWPRGLL LYGPPGTGKT SLVRAVVQEC DAHLIVLSPH SVHRAHAGES
101: EKVLREAFAE ASSHAVSDKP SVIFIDEIDV LCPRRDARRE QDVRIASQLF TLMDSNKPSS SAPRVVVVAS TNRVDAIDPA LRRAGRFDAL VEVSTPNEED
201: RLKILQLYTK KVNLDPSVDL QAIAISCNGY VGADLEALCR EATISASKRS SDSLILTSQD FKIAKSVVGP SINRGITVEI PKVTWDDVGG LKDLKKKLQQ
301: AVEWPIKHSA AFVKMGISPM RGILLHGPPG CSKTTLAKAA ANAAQASFFS LSCAELFSMY VGEGEALLRN TFQRARLASP SIIFFDEADV VACKRGDESS
401: SNSSTVGERL LSTLLTEMDG LEEAKGILVL AATNRPYAID AALMRPGRFD LVLYVPPPDL EARFEILQVH TRNMTLGDDV DLRKIAEETD LFTGAELEGL
501: CRESGTVSLR ENIAATAVFN RHFQTAKSSL KPALTIEEVE TYSSFRKAAK RSDSKPIPIN KKKATSTVFG FSWQLGVLSL LLLATGNYYF NHTKHELLVA
601: SAT
101: EKVLREAFAE ASSHAVSDKP SVIFIDEIDV LCPRRDARRE QDVRIASQLF TLMDSNKPSS SAPRVVVVAS TNRVDAIDPA LRRAGRFDAL VEVSTPNEED
201: RLKILQLYTK KVNLDPSVDL QAIAISCNGY VGADLEALCR EATISASKRS SDSLILTSQD FKIAKSVVGP SINRGITVEI PKVTWDDVGG LKDLKKKLQQ
301: AVEWPIKHSA AFVKMGISPM RGILLHGPPG CSKTTLAKAA ANAAQASFFS LSCAELFSMY VGEGEALLRN TFQRARLASP SIIFFDEADV VACKRGDESS
401: SNSSTVGERL LSTLLTEMDG LEEAKGILVL AATNRPYAID AALMRPGRFD LVLYVPPPDL EARFEILQVH TRNMTLGDDV DLRKIAEETD LFTGAELEGL
501: CRESGTVSLR ENIAATAVFN RHFQTAKSSL KPALTIEEVE TYSSFRKAAK RSDSKPIPIN KKKATSTVFG FSWQLGVLSL LLLATGNYYF NHTKHELLVA
601: SAT
Arabidopsis Description
CDC48BCell division control protein 48 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPR1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.