Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73571 | Canola | cytosol | 96.24 | 96.37 |
| KRG99061 | Soybean | cytosol | 23.79 | 88.5 |
| KRG94277 | Soybean | cytosol | 24.19 | 86.96 |
| CDY13308 | Canola | cytosol | 92.34 | 84.81 |
| CDY11249 | Canola | cytosol | 88.98 | 82.96 |
| CDY41316 | Canola | cytosol, extracellular | 89.25 | 81.98 |
| CDY54618 | Canola | cytosol | 88.98 | 81.93 |
| CDY22207 | Canola | cytosol | 89.11 | 81.85 |
| CDX73996 | Canola | cytosol | 88.98 | 81.83 |
| CDY07941 | Canola | cytosol | 88.98 | 81.83 |
| CDY41581 | Canola | cytosol | 88.71 | 81.68 |
| Zm00001d048409_P001 | Maize | cytosol | 87.5 | 80.97 |
| CDX80862 | Canola | cytosol, plastid | 88.04 | 80.96 |
| Zm00001d027707_P001 | Maize | cytosol, plasma membrane | 87.5 | 80.67 |
| Os03t0151800-02 | Rice | cytosol, extracellular, nucleus, plasma membrane, plastid | 87.23 | 80.22 |
| Zm00001d014124_P001 | Maize | cytosol, plasma membrane | 87.37 | 80.15 |
| Zm00001d032859_P006 | Maize | plasma membrane | 87.23 | 80.12 |
| TraesCS3A01G144500.1 | Wheat | cytosol | 55.51 | 77.49 |
| TraesCSU01G001000.1 | Wheat | cytosol | 83.6 | 77.46 |
| TraesCS3A01G145000.1 | Wheat | cytosol | 71.77 | 76.72 |
| CDX67563 | Canola | cytosol | 90.19 | 76.34 |
| TraesCS1D01G194500.1 | Wheat | cytosol | 27.15 | 76.23 |
| TraesCS3B01G154400.1 | Wheat | cytosol | 79.97 | 75.51 |
| TraesCS1A01G248500.1 | Wheat | cytosol | 60.22 | 75.04 |
| TraesCS3B01G171300.1 | Wheat | cytosol | 73.39 | 74.9 |
| HORVU0Hr1G006340.1 | Barley | cytosol | 79.17 | 74.75 |
| TraesCS1B01G419200.1 | Wheat | cytosol | 79.17 | 74.65 |
| TraesCS5B01G323100.1 | Wheat | cytosol | 58.2 | 74.53 |
| TraesCS3B01G171200.1 | Wheat | cytosol | 78.9 | 74.49 |
| TraesCS1B01G259200.1 | Wheat | cytosol | 78.9 | 74.4 |
| TraesCS3B01G172000.1 | Wheat | cytosol | 78.36 | 74.36 |
| TraesCS3A01G145100.1 | Wheat | cytosol | 78.76 | 74.27 |
| TraesCS3B01G172100.1 | Wheat | cytosol | 78.76 | 74.18 |
| EER95525 | Sorghum | cytosol | 77.02 | 73.46 |
| TraesCS3B01G171400.1 | Wheat | cytosol | 71.77 | 73.45 |
| KXG40206 | Sorghum | cytosol | 77.02 | 73.27 |
| HORVU3Hr1G029450.1 | Barley | cytosol | 79.17 | 72.9 |
| HORVU3Hr1G029440.1 | Barley | cytosol | 79.17 | 72.36 |
| TraesCS1D01G340100.1 | Wheat | cytosol | 23.39 | 67.97 |
| TraesCS3D01G153300.1 | Wheat | cytosol | 20.43 | 67.86 |
| Os10t0442600-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 17.74 | 67.69 |
| KRH45638 | Soybean | cytosol | 27.15 | 62.93 |
| GSMUA_Achr5P13290_001 | Banana | cytosol | 17.47 | 59.09 |
| Zm00001d032117_P001 | Maize | cytosol | 23.25 | 54.06 |
| CDY25624 | Canola | cytosol | 12.37 | 36.65 |
| CDY04161 | Canola | cytosol | 26.34 | 32.5 |
| CDX74308 | Canola | mitochondrion | 29.84 | 31.44 |
| CDX84794 | Canola | cytosol | 30.11 | 30.15 |
| CDY23949 | Canola | cytosol | 29.3 | 30.07 |
| CDX91939 | Canola | cytosol, mitochondrion | 30.38 | 29.09 |
| CDY20370 | Canola | cytosol | 10.35 | 28.62 |
| CDY45794 | Canola | nucleus | 30.24 | 28.23 |
| CDY33111 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 26.61 | 27.65 |
| CDX74842 | Canola | cytosol | 15.19 | 27.43 |
| CDX71534 | Canola | cytosol | 14.65 | 27.32 |
| CDY02428 | Canola | cytosol, extracellular | 14.65 | 27.32 |
| CDY22373 | Canola | cytosol | 14.65 | 27.32 |
| CDY25226 | Canola | cytosol | 14.65 | 27.32 |
| CDY24076 | Canola | cytosol | 15.46 | 27.0 |
| CDY30665 | Canola | cytosol | 15.46 | 27.0 |
| CDY36602 | Canola | cytosol | 15.46 | 27.0 |
| CDY02494 | Canola | cytosol | 15.32 | 26.76 |
| CDY25685 | Canola | cytosol | 15.32 | 26.76 |
| CDY39032 | Canola | cytosol | 9.01 | 26.69 |
| CDY20470 | Canola | cytosol, plasma membrane | 15.19 | 26.53 |
| CDY05176 | Canola | cytosol | 14.38 | 25.24 |
| CDY18782 | Canola | cytosol | 14.38 | 25.24 |
| CDY18801 | Canola | cytosol | 14.38 | 25.24 |
| CDY27761 | Canola | cytosol | 14.38 | 25.24 |
| CDX89698 | Canola | endoplasmic reticulum | 23.52 | 25.18 |
| CDX74142 | Canola | cytosol | 14.25 | 25.0 |
| CDY40714 | Canola | cytosol | 14.25 | 25.0 |
| CDX72118 | Canola | plastid | 31.59 | 24.89 |
| CDX88666 | Canola | cytosol | 13.31 | 24.5 |
| CDY02806 | Canola | cytosol | 13.31 | 24.5 |
| CDY32714 | Canola | cytosol | 13.31 | 24.5 |
| CDY32995 | Canola | cytosol, extracellular | 13.31 | 24.5 |
| CDY43865 | Canola | cytosol | 13.31 | 24.5 |
| CDY58566 | Canola | cytosol | 13.31 | 24.5 |
| CDY06847 | Canola | cytosol | 14.38 | 24.15 |
| CDX92914 | Canola | cytosol, extracellular | 14.25 | 23.93 |
| CDY35245 | Canola | cytosol | 14.25 | 23.93 |
| CDY35832 | Canola | cytosol | 13.31 | 23.63 |
| CDX97472 | Canola | cytosol | 14.11 | 23.6 |
| CDY14224 | Canola | cytosol | 14.11 | 23.6 |
| CDX70903 | Canola | cytosol | 13.17 | 23.56 |
| CDY39033 | Canola | cytosol | 12.77 | 23.4 |
| CDY30663 | Canola | cytosol | 13.44 | 23.15 |
| CDY08201 | Canola | cytosol | 11.02 | 23.1 |
| CDY56774 | Canola | plastid | 31.32 | 22.89 |
| CDX89923 | Canola | cytosol | 22.98 | 22.38 |
| CDY20371 | Canola | cytosol, plastid | 12.63 | 21.36 |
| CDY59958 | Canola | cytosol | 10.35 | 21.15 |
| CDY32490 | Canola | mitochondrion | 25.67 | 20.6 |
| CDY37450 | Canola | mitochondrion | 25.54 | 20.54 |
| CDY02982 | Canola | cytosol | 27.69 | 17.47 |
| CDY18139 | Canola | extracellular, vacuole | 6.99 | 17.16 |
| CDX88865 | Canola | cytosol, extracellular | 14.11 | 16.69 |
| CDX69950 | Canola | cytosol | 23.79 | 16.21 |
| CDY62119 | Canola | cytosol | 23.79 | 16.21 |
| CDY42324 | Canola | cytosol, extracellular | 14.11 | 14.64 |
| CDY44958 | Canola | cytosol, plasma membrane | 14.11 | 14.56 |
| CDY69655 | Canola | cytosol, nucleus | 1.08 | 3.52 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.4.2.1 | Gene3D:2.40.40.20 | Gene3D:3.10.330.10 | Gene3D:3.40.50.300 | GO:A0A078CQ09 |
| InterPro:AAA+_ATPase | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | InterPro:Asp_de-COase-like_dom_sf | InterPro:CDC48_domain_2-like_sf | InterPro:CDC4_N-term_subdom |
| EnsemblPlants:CDX78154 | ProteinID:CDX78154 | ProteinID:CDX78154.1 | InterPro:Cdc48_dom2 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00129457001 | InterPro:P-loop_NTPase | PFAM:PF00004 | PFAM:PF02359 |
| PFAM:PF02933 | ScanProsite:PS00674 | PANTHER:PTHR23077 | PANTHER:PTHR23077:SF122 | SMART:SM00382 | SMART:SM01072 |
| SMART:SM01073 | SUPFAM:SSF50692 | SUPFAM:SSF52540 | SUPFAM:SSF54585 | UniParc:UPI0004EDE39D | SEG:seg |
Description
BnaA09g33490D
Coordinates
chrLK031814:+:1439054..1442659
Molecular Weight (calculated)
82611.3 Da
IEP (calculated)
4.943
GRAVY (calculated)
-0.398
Length
744 amino acids
Sequence
(BLAST)
(BLAST)
001: MRNQAGSSDS KGTKKDFSTA ILERKKAANR LVVDEAINDD NSIVYLHPET MEKLQLFRGD TVLIKGKKRK DTVCIALPDD TCEEPKIRMN KVVRSNLRVR
101: LGDVISLHQF PDVKYGNRVH VLPIDDTIEG VTGNIFDAYL KPYFLEAYRP VKKGDLFLVR GGMRSIEFKV IETDPAEYCV VAPNTEIFCE GEPIKREDEE
201: RHPQLFKSIG VKPPKGILLY GPPGTGKTLL ARAVANETGA FFLCINGPEI MSKMAGESES NLRKAFKEAE KNAPSIIFID EIDSIAPKRD KTNGEVERRI
301: VSQLLTLMDG LKARAHVIVM GATNRPNSID SALRRFGRFD REIDIGVPDE IGRLEVLRIH TKNMKLAEDV DLERASKDTH GYVGADLAAL CTEAALQCIR
401: EKMDVIDIED EEIDAEILNS MAVTNEHYLT ALGNSNPSAL RETVVEVPNV SWEDIGGLEN VKRELQETVQ YPVEHPEKFE KFGMSPSKGV LFYGPPGCGK
501: TLLAKAIANE CQANFISIKG PELLTMWFGE SEANVREIFD KARQSAPCVL FFDELDSIAT QRGSSVGDAG GAADRVWMLI YIPLPDEESR YQIFKSCLRK
601: SPVAKDVDLR ALAKYTQGFS GADITEICQR SCKYAIRENI EKDIEKERKR AEAPEAMEED EEEIADIKAG HFEESMKYAR RSVSDADIRK YQAFAQTLQQ
701: SRGFGSEFRF PQVTGAGAAA TTAGGADPFA TTGGAAAEDD DLYS
101: LGDVISLHQF PDVKYGNRVH VLPIDDTIEG VTGNIFDAYL KPYFLEAYRP VKKGDLFLVR GGMRSIEFKV IETDPAEYCV VAPNTEIFCE GEPIKREDEE
201: RHPQLFKSIG VKPPKGILLY GPPGTGKTLL ARAVANETGA FFLCINGPEI MSKMAGESES NLRKAFKEAE KNAPSIIFID EIDSIAPKRD KTNGEVERRI
301: VSQLLTLMDG LKARAHVIVM GATNRPNSID SALRRFGRFD REIDIGVPDE IGRLEVLRIH TKNMKLAEDV DLERASKDTH GYVGADLAAL CTEAALQCIR
401: EKMDVIDIED EEIDAEILNS MAVTNEHYLT ALGNSNPSAL RETVVEVPNV SWEDIGGLEN VKRELQETVQ YPVEHPEKFE KFGMSPSKGV LFYGPPGCGK
501: TLLAKAIANE CQANFISIKG PELLTMWFGE SEANVREIFD KARQSAPCVL FFDELDSIAT QRGSSVGDAG GAADRVWMLI YIPLPDEESR YQIFKSCLRK
601: SPVAKDVDLR ALAKYTQGFS GADITEICQR SCKYAIRENI EKDIEKERKR AEAPEAMEED EEEIADIKAG HFEESMKYAR RSVSDADIRK YQAFAQTLQQ
701: SRGFGSEFRF PQVTGAGAAA TTAGGADPFA TTGGAAAEDD DLYS
001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE
Arabidopsis Description
CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.