CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74308	Canola	mitochondrion	87.39	96.18
Bra000999.1-P	Field mustard	cytosol, mitochondrion	95.75	89.32
CDY25624	Canola	cytosol	28.57	88.45
CDX84794	Canola	cytosol	71.17	74.43
CDY23949	Canola	cytosol	69.11	74.07
AT3G01610.2	Thale cress	nucleus	77.22	72.29
CDY45794	Canola	nucleus	72.72	70.89
CDX89698	Canola	endoplasmic reticulum	58.69	65.61
Zm00001d009592_P001	Maize	cytosol	19.05	56.49
Zm00001d035913_P002	Maize	cytosol, mitochondrion	48.91	51.84
PGSC0003DMT400015455	Potato	mitochondrion	50.71	51.64
GSMUA_Achr4P03560_001	Banana	mitochondrion	51.61	51.28
EER87717	Sorghum	cytosol	51.09	51.23
Solyc01g068330.2.1	Tomato	nucleus	53.8	50.91
PGSC0003DMT400046254	Potato	cytosol	53.67	50.73
Zm00001d045566_P001	Maize	cytosol, mitochondrion	49.94	50.52
VIT_01s0010g02600.t01	Wine grape	cytosol	53.41	50.3
Os06t0109400-01	Rice	cytosol	49.81	50.26
Zm00001d022096_P002	Maize	mitochondrion	48.65	49.93
TraesCS5D01G081900.1	Wheat	mitochondrion	47.62	49.8
TraesCS7D01G023600.1	Wheat	mitochondrion	49.55	49.04
TraesCS4A01G463300.1	Wheat	mitochondrion	49.29	48.79
TraesCS7A01G025800.1	Wheat	mitochondrion	49.16	48.66
TraesCS3D01G443600.1	Wheat	mitochondrion	46.46	48.26
TraesCS3A01G450800.1	Wheat	mitochondrion	46.33	48.26
Zm00001d027244_P001	Maize	cytosol	22.65	48.09
TraesCS3B01G487900.1	Wheat	mitochondrion	45.69	47.65
Zm00001d002717_P001	Maize	mitochondrion	24.71	47.06
HORVU7Hr1G002880.2	Barley	plastid	47.62	46.19
Zm00001d053999_P001	Maize	cytosol	23.17	43.8
KRH10420	Soybean	mitochondrion	26.38	41.41
CDY20370	Canola	cytosol	12.87	37.17
CDY39032	Canola	cytosol	11.84	36.65
CDY04161	Canola	cytosol	26.38	34.0
CDY41581	Canola	cytosol	34.11	32.8
CDY54618	Canola	cytosol	34.11	32.8
CDX73996	Canola	cytosol	33.85	32.51
CDY07941	Canola	cytosol	33.85	32.51
CDY41316	Canola	cytosol, extracellular	33.85	32.47
CDY22207	Canola	cytosol	33.85	32.47
CDY11249	Canola	cytosol	33.08	32.21
CDY13308	Canola	cytosol	33.46	32.1
CDX80862	Canola	cytosol, plastid	33.08	31.77
CDY22373	Canola	cytosol	15.96	31.08
CDX71534	Canola	cytosol	15.96	31.08
CDY02428	Canola	cytosol, extracellular	15.83	30.83
CDY25226	Canola	cytosol	15.83	30.83
CDX78154	Canola	cytosol	29.09	30.38
CDX73571	Canola	cytosol	28.96	30.28
CDX67563	Canola	cytosol	33.2	29.35
CDX74842	Canola	cytosol	15.32	28.88
CDY20470	Canola	cytosol, plasma membrane	15.83	28.87
CDY24076	Canola	cytosol	15.7	28.64
CDY36602	Canola	cytosol	15.7	28.64
CDY30665	Canola	cytosol	15.7	28.64
CDY33111	Canola	endoplasmic reticulum, plasma membrane, vacuole	26.38	28.63
CDY02494	Canola	cytosol	15.57	28.4
CDY39033	Canola	cytosol	14.8	28.33
CDY25685	Canola	cytosol	15.44	28.17
CDY32995	Canola	cytosol, extracellular	14.29	27.48
CDY02806	Canola	cytosol	14.29	27.48
CDY58566	Canola	cytosol	14.29	27.48
CDX88666	Canola	cytosol	14.29	27.48
CDY43865	Canola	cytosol	14.29	27.48
CDY32714	Canola	cytosol	14.29	27.48
CDX70903	Canola	cytosol	14.54	27.16
CDY35832	Canola	cytosol	14.54	26.97
CDY20371	Canola	cytosol, plastid	14.54	25.68
CDY08201	Canola	cytosol	11.71	25.63
CDY30663	Canola	cytosol	14.03	25.23
CDY06847	Canola	cytosol	14.29	25.06
CDX92914	Canola	cytosol, extracellular	14.29	25.06
CDY35245	Canola	cytosol	14.29	25.06
CDX97472	Canola	cytosol	14.29	24.94
CDY14224	Canola	cytosol	14.29	24.94
CDY05176	Canola	cytosol	13.51	24.76
CDY18782	Canola	cytosol	13.51	24.76
CDY27761	Canola	cytosol	13.51	24.76
CDY18801	Canola	cytosol	13.51	24.76
CDX74142	Canola	cytosol	13.38	24.53
CDY40714	Canola	cytosol	13.38	24.53
CDX72118	Canola	plastid	29.34	24.15
CDX89923	Canola	cytosol	23.04	23.43
CDY56774	Canola	plastid	29.47	22.5
CDY59958	Canola	cytosol	10.3	21.98
CDY32490	Canola	mitochondrion	25.23	21.14
CDY37450	Canola	mitochondrion	25.1	21.08
CDX88865	Canola	cytosol, extracellular	14.41	17.81
CDY02982	Canola	cytosol	26.38	17.39
CDX69950	Canola	cytosol	23.68	16.85
CDY62119	Canola	cytosol	23.42	16.67
CDY42324	Canola	cytosol, extracellular	14.54	15.76
CDY44958	Canola	cytosol, plasma membrane	14.54	15.67
CDY18139	Canola	extracellular, vacuole	5.79	14.85
CDY69655	Canola	cytosol, nucleus	0.0	0.0

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078DTY5	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	EnsemblPlants:CDX91939	ProteinID:CDX91939	ProteinID:CDX91939.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00153575001	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674
PANTHER:PTHR23077	PANTHER:PTHR23077:SF55	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI0004EE5B62	SEG:seg

Description

BnaC03g32410D

Coordinates

chrLK031870:-:909006..912441

Molecular Weight (calculated)

85350.7 Da

IEP (calculated)

6.657

GRAVY (calculated)

-0.423

Length

777 amino acids

Sequence
(BLAST)

001: MVRRGRGGGM GGGINRRYLS QVMDSCGKDL ATAEEMVDDL RSRYGNFARL TRQVLLLNVR NVLSARNKRA KDEVEDDNNG GDDSDDEETE TSLLLLLRLK
101: KTLSPRFDLI NDSLRDNYAK MNNSPAAKKP IVEVETVTNN NKGRSKMTTM GLKKEARVSL PLSGTTPTHN NNKGGGGGPT FKDFGGIKKV LDDLENYILF
201: PLLNPPPFMT MGVKPPSGIL FHGPPGCGKT QLANAIANEV GVPFYQISAT EVVSGVSGAS EENIRELFSK AYRTAPSIVF IDEIDAIGSK RENQQREMEK
301: RIVTQLLTCM DGPRNKKNDD ADSSSSGYVL VIGATNRPDA LDPALRRSGR FEREIALNVP DEDARAEILS VVAQRLRLEG SFDMKRIARL TPGFVGADLE
401: GVANMAGSLG IKRVKDSRKL QLSGDSDNQD DRSWLRQPWS EEDLEKLFVR MSDFEEAVKL VKGSLTREGF STVPNVTWGD VGGLDHLRLE LNNYIVRPIK
501: NPEIYKAFGA SLETGFLLYG PPGCGKTLVA KAVANEAGAN FIHIKGPELL NKYVGESELA IRTLFQRART SSPCVLFFDE VDALTTSRGR EGGSVVESVL
601: NQFLTELDGG ERRNVYVIGA TNRPDVIDSA LLRPGRFGNL VYVPLPNADE RVLILKSIAK KRPIDPSVDL DAIAKNCEGF SGADLANLMD KAIHVAVKEK
701: FGSSESSEDN NIDLSDCTIK MTHFEQALSL VTPSVSKQQI KHYEELPKKL QRSTGRNNME QINVGSSFTL EENKVLS

Best Arabidopsis Sequence Match ( AT3G01610.2 )
(BLAST)

001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE DEIEKARTKS

Arabidopsis Description

CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.