Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
- plastid 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d045566_P001 | Maize | cytosol, mitochondrion | 79.48 | 79.69 |
Zm00001d035913_P002 | Maize | cytosol, mitochondrion | 75.32 | 79.13 |
EER87717 | Sorghum | cytosol | 79.61 | 79.1 |
Zm00001d009592_P001 | Maize | cytosol | 25.32 | 74.43 |
Zm00001d022096_P002 | Maize | mitochondrion | 71.3 | 72.52 |
TraesCS4A01G463300.1 | Wheat | mitochondrion | 73.51 | 72.1 |
TraesCS7A01G025800.1 | Wheat | mitochondrion | 73.25 | 71.85 |
TraesCS7D01G023600.1 | Wheat | mitochondrion | 73.12 | 71.72 |
TraesCS5D01G081900.1 | Wheat | mitochondrion | 67.66 | 70.12 |
TraesCS3B01G487900.1 | Wheat | mitochondrion | 66.23 | 68.46 |
TraesCS3D01G443600.1 | Wheat | mitochondrion | 65.97 | 67.91 |
TraesCS3A01G450800.1 | Wheat | mitochondrion | 65.58 | 67.69 |
HORVU7Hr1G002880.2 | Barley | plastid | 69.74 | 67.04 |
CDY25624 | Canola | cytosol | 20.91 | 64.14 |
GSMUA_Achr4P03560_001 | Banana | mitochondrion | 64.03 | 63.04 |
KRH44049 | Soybean | nucleus | 58.31 | 56.76 |
VIT_01s0010g02600.t01 | Wine grape | cytosol | 59.35 | 55.39 |
PGSC0003DMT400046254 | Potato | cytosol | 58.18 | 54.5 |
Solyc01g068330.2.1 | Tomato | nucleus | 57.66 | 54.08 |
CDX74308 | Canola | mitochondrion | 48.83 | 53.26 |
PGSC0003DMT400015455 | Potato | mitochondrion | 51.95 | 52.42 |
CDX91939 | Canola | cytosol, mitochondrion | 50.26 | 49.81 |
CDX84794 | Canola | cytosol | 47.4 | 49.13 |
Bra022833.1-P | Field mustard | cytosol | 47.01 | 48.72 |
CDY23949 | Canola | cytosol | 45.71 | 48.55 |
AT3G01610.2 | Thale cress | nucleus | 52.08 | 48.31 |
Bra000999.1-P | Field mustard | cytosol, mitochondrion | 51.43 | 47.54 |
CDY45794 | Canola | nucleus | 48.05 | 46.42 |
CDX89698 | Canola | endoplasmic reticulum | 39.61 | 43.88 |
KRH10420 | Soybean | mitochondrion | 28.18 | 43.84 |
Os05t0376200-00 | Rice | cytosol | 20.0 | 39.39 |
Os04t0498800-01 | Rice | cytosol | 27.27 | 36.33 |
Os02t0784700-00 | Rice | cytosol | 8.57 | 35.11 |
Os03t0151800-02 | Rice | cytosol, extracellular, nucleus, plasma membrane, plastid | 33.25 | 31.64 |
Os02t0199900-01 | Rice | nucleus, plasma membrane | 15.58 | 30.0 |
Os02t0325100-01 | Rice | plastid | 15.45 | 28.4 |
Os08t0413000-00 | Rice | mitochondrion | 33.12 | 28.21 |
Os02t0205300-01 | Rice | cytosol | 15.45 | 28.07 |
Os10t0442600-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 7.01 | 27.69 |
Os06t0607800-01 | Rice | nucleus | 14.42 | 27.68 |
Os06t0192600-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 15.19 | 27.46 |
Os06t0600100-01 | Rice | plasma membrane | 15.06 | 27.42 |
Os04t0284600-01 | Rice | cytosol | 12.34 | 26.61 |
Os07t0691800-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 14.81 | 25.45 |
Os02t0803700-01 | Rice | cytosol, nucleus, plastid | 14.16 | 25.41 |
Os03t0298400-01 | Rice | plasma membrane | 14.81 | 25.33 |
Os06t0173100-01 | Rice | cytosol, nucleus, plasma membrane | 14.03 | 25.17 |
Os09t0560200-01 | Rice | cytosol, mitochondrion | 13.9 | 23.88 |
Os04t0617600-01 | Rice | cytosol | 24.55 | 20.11 |
Os08t0556550-01 | Rice | cytosol | 2.47 | 17.76 |
Os11t0220400-01 | Rice | mitochondrion | 4.55 | 7.48 |
Os06t0600301-00 | Rice | plasma membrane | 0.26 | 0.88 |
Os08t0556400-01 | Rice | endoplasmic reticulum, golgi, plasma membrane | 0.52 | 0.57 |
Protein Annotations
Gene3D:1.10.8.60 | Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:4339880 | InterPro:AAA+_ATPase | InterPro:ATPase_AAA_CS |
InterPro:ATPase_AAA_core | ProteinID:BAD67691.1 | ProteinID:BAD67894.1 | ProteinID:BAF18490.1 | ProteinID:BAS95777.1 | ProteinID:EEE64962.1 |
GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0008150 | GO:GO:0009987 |
GO:GO:0051301 | EnsemblPlantsGene:Os06g0109400 | EnsemblPlants:Os06t0109400-01 | InterPro:P-loop_NTPase | PFAM:PF00004 | ScanProsite:PS00674 |
PANTHER:PTHR23077 | PANTHER:PTHR23077:SF55 | UniProt:Q5VRN1 | SMART:SM00382 | SUPFAM:SSF52540 | UniParc:UPI0000457C49 |
RefSeq:XP_015644237.1 | SEG:seg | : | : | : | : |
Description
ATPase, AAA-type, core domain containing protein. (Os06t0109400-01)
Coordinates
chr6:+:550937..555650
Molecular Weight (calculated)
84790.8 Da
IEP (calculated)
7.648
GRAVY (calculated)
-0.486
Length
770 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKRARHGGS GRSHSPYFES QLRRLITDGG LSSSSAEDVA IALRSRFPEF RRHKLDPFTS AVRRALNSIP SDSHSDSADD SHASTPSQRR RRRPRHDAHA
101: TASSSTSLSD DAAHPPPPPI YDVTKSMLRT QYASQTPKRD TGSNQQLEIE IAAEKPRRLI TSDGGAGGEA KPESAPPSEG GDRGGKGPTF SDLGGMESVI
201: EQLMMEVVVP LCHPEVPRWL GVKPVAGLLL HGPPGCGKTT LAHAIANETG VPFYKISAPE VVSGVSGASE ENIRSLFKKA YRTAPSIVFI DEIDAIASKR
301: ENLQREMERR IVTQLMTCMD EYHQQIGSGS GDVGSESAEK KPGYVIVIGA TNRPDAVDQA LRRPGRFDRE ISLGVPDEYA RKKILMMLTR NLRLEGQLDL
401: LKIARATSSF VGADLKALVD KAGNLAMKRI IDRRRAQFCQ EHDENSKHDW WRQPWDANEI EGLSITMDDF EEATKMVQPS LRREGFSSIP DVTWDDVGGL
501: DSLRKEFDRY IIRCIKQPEE YKTFGLNMQA GFLLFGPPGC GKTLIAKAVA HEAGANFIHI KGPELLNKYV GESESEVRKI FIRAQTNTPC ILFFDEVDAL
601: TTKRGKEGGW VVERLLNQLL IELDGAGERK GVFVIGATNR IDVIDDAALR PGRFGKKHYV PLPGADERVS ILRALARNKP ISSSVDLGAL ARREECKNLT
701: GADLASMVNE AAMAALEERL EFLENGESSM SSSSAIELPH FERALAKMQP SVSEQQRRHY EALCKKYSAS
101: TASSSTSLSD DAAHPPPPPI YDVTKSMLRT QYASQTPKRD TGSNQQLEIE IAAEKPRRLI TSDGGAGGEA KPESAPPSEG GDRGGKGPTF SDLGGMESVI
201: EQLMMEVVVP LCHPEVPRWL GVKPVAGLLL HGPPGCGKTT LAHAIANETG VPFYKISAPE VVSGVSGASE ENIRSLFKKA YRTAPSIVFI DEIDAIASKR
301: ENLQREMERR IVTQLMTCMD EYHQQIGSGS GDVGSESAEK KPGYVIVIGA TNRPDAVDQA LRRPGRFDRE ISLGVPDEYA RKKILMMLTR NLRLEGQLDL
401: LKIARATSSF VGADLKALVD KAGNLAMKRI IDRRRAQFCQ EHDENSKHDW WRQPWDANEI EGLSITMDDF EEATKMVQPS LRREGFSSIP DVTWDDVGGL
501: DSLRKEFDRY IIRCIKQPEE YKTFGLNMQA GFLLFGPPGC GKTLIAKAVA HEAGANFIHI KGPELLNKYV GESESEVRKI FIRAQTNTPC ILFFDEVDAL
601: TTKRGKEGGW VVERLLNQLL IELDGAGERK GVFVIGATNR IDVIDDAALR PGRFGKKHYV PLPGADERVS ILRALARNKP ISSSVDLGAL ARREECKNLT
701: GADLASMVNE AAMAALEERL EFLENGESSM SSSSAIELPH FERALAKMQP SVSEQQRRHY EALCKKYSAS
001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE DEIEKARTKS
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE DEIEKARTKS
Arabidopsis Description
CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.