CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
endoplasmic reticulum 1
cytosol 2
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10420	Soybean	mitochondrion	52.47	83.84
VIT_01s0010g02600.t01	Wine grape	cytosol	70.42	67.52
Solyc01g068330.2.1	Tomato	nucleus	65.87	63.46
PGSC0003DMT400046254	Potato	cytosol	65.61	63.14
Zm00001d009592_P001	Maize	cytosol	20.73	62.6
GSMUA_Achr4P03560_001	Banana	mitochondrion	61.44	62.15
Zm00001d035913_P002	Maize	cytosol, mitochondrion	54.99	59.35
PGSC0003DMT400015455	Potato	mitochondrion	56.89	58.98
Os06t0109400-01	Rice	cytosol	56.76	58.31
EER87717	Sorghum	cytosol	56.64	57.81
Zm00001d045566_P001	Maize	cytosol, mitochondrion	56.01	57.68
TraesCS7A01G025800.1	Wheat	mitochondrion	56.51	56.94
TraesCS4A01G463300.1	Wheat	mitochondrion	56.51	56.94
TraesCS7D01G023600.1	Wheat	mitochondrion	56.26	56.69
Zm00001d022096_P002	Maize	mitochondrion	52.21	54.56
TraesCS5D01G081900.1	Wheat	mitochondrion	50.82	54.1
HORVU7Hr1G002880.2	Barley	plastid	53.86	53.18
TraesCS3B01G487900.1	Wheat	mitochondrion	50.06	53.15
TraesCS3A01G450800.1	Wheat	mitochondrion	49.68	52.68
TraesCS3D01G443600.1	Wheat	mitochondrion	49.68	52.54
Zm00001d027244_P001	Maize	cytosol	23.51	50.82
Zm00001d002717_P001	Maize	mitochondrion	25.54	49.51
Zm00001d053999_P001	Maize	cytosol	24.15	46.47
KRG99061	Soybean	cytosol	10.49	41.5
KRG94277	Soybean	cytosol	10.24	39.13
KRH70928	Soybean	cytosol	27.05	35.31
KRH67721	Soybean	endoplasmic reticulum, nucleus	33.88	33.17
KRH26511	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	33.63	32.96
KRH19916	Soybean	endoplasmic reticulum, mitochondrion	33.75	32.92
KRG96011	Soybean	endoplasmic reticulum, mitochondrion, nucleus	33.63	32.92
KRH30601	Soybean	cytosol	33.5	32.88
KRH32530	Soybean	endoplasmic reticulum, mitochondrion	33.75	32.84
KRH22853	Soybean	cytosol, endoplasmic reticulum, mitochondrion	33.5	32.84
KRH25081	Soybean	cytosol, endoplasmic reticulum, mitochondrion	29.58	32.32
KRH63585	Soybean	endoplasmic reticulum	33.25	32.31
KRH54357	Soybean	cytosol, endoplasmic reticulum, mitochondrion	33.0	32.06
KRH51796	Soybean	cytosol	15.68	31.16
KRH61120	Soybean	endoplasmic reticulum	15.68	31.16
KRH05868	Soybean	cytosol, nucleus	15.55	30.83
KRH15139	Soybean	cytosol, endoplasmic reticulum, nucleus	15.55	30.83
KRH45638	Soybean	cytosol	12.39	30.53
KRH46990	Soybean	nucleus	15.3	28.95
KRH44668	Soybean	cytosol, mitochondrion, nucleus	15.3	28.95
KRH30674	Soybean	cytosol, nucleus	14.79	28.33
KRG97280	Soybean	cytosol, nucleus	15.04	27.93
KRH06311	Soybean	cytosol	15.04	27.93
KRH69005	Soybean	nucleus	15.04	27.93
KRH47728	Soybean	cytosol, nucleus	15.04	27.93
KRG98107	Soybean	cytosol	14.79	27.73
KRH67524	Soybean	nucleus	15.55	27.58
KRG95799	Soybean	cytosol, nucleus	15.55	27.58
KRH30673	Soybean	cytosol, nucleus	14.66	27.42
KRH32292	Soybean	cytosol, nucleus	15.17	27.09
KRH19693	Soybean	cytosol	15.17	27.09
KRH06953	Soybean	cytosol	9.23	27.04
KRH45565	Soybean	endoplasmic reticulum	6.95	26.96
KRG92899	Soybean	cytosol, nucleus	14.41	26.95
KRH33891	Soybean	endoplasmic reticulum, nucleus	14.41	26.95
KRH68501	Soybean	nucleus	14.41	26.82
KRG96790	Soybean	mitochondrion	10.87	25.9
KRH51488	Soybean	mitochondrion	13.27	24.82
KRH66707	Soybean	plastid	31.73	24.0
KRH00031	Soybean	plastid	9.99	22.9
KRG95054	Soybean	plastid	21.87	22.44
KRG96401	Soybean	mitochondrion	24.02	20.67
KRH68139	Soybean	cytosol	17.45	20.6
KRH50491	Soybean	cytosol	25.16	17.61

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100809594	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	EMBL:ACUP02004908
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil	EnsemblPlantsGene:GLYMA_08G186800	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	UniProt:I1KUM2	EnsemblPlants:KRH44049	ProteinID:KRH44049	ProteinID:KRH44049.1
InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF55	SMART:SM00382
SUPFAM:SSF52540	UniParc:UPI0002338864	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:14960793..14968609

Molecular Weight (calculated)

88406.2 Da

IEP (calculated)

6.095

GRAVY (calculated)

-0.527

Length

791 amino acids

Sequence
(BLAST)

001: MGRRNGGRSL QETLRRRLES CKSKYSTAEE FANHLRSTYP DYHRTKHQTL IRFVQEALHS TAKLNHTPTP KHCDGDDDDD EEGEAQSASR KRRKKIDGSE
101: ERLQRMEALH VRSKVQRSSS SSSASESDDE DEEETVSTSE DAIYGEKVEP EFDLMKTMLR KSYTPKKVAA EEKNVELEVG NSSKDTLVNE ERKEVKGSSS
201: GSVSNRKDGP RFKDLGGMKE VLEELKMEVI VPLFHPQLPR QLGVRPMAGI LLHGPPGCGK TKLAHAIAHE TGLPFYQISA TEVVSGVSGA SEENIRELFA
301: KAYRSAPAIV FIDEIDAIAS KRENLQREME KRIVTQLMTC MDQSNRLLQP ADDVESSGDD HHPGYVLVIG ATNRPDAVDP ALRRPGRFDR EIIIGNPDES
401: AREEILSVLT CDLRLEGLFD LRKIARATSG FVGADLAALV DKAGNLAMKR IIDERKRELS QDLTSEHAED WWREPWSVEE INKLAIKMSD FEEAANKVQP
501: SLRREGFSSI PNVKWDDVGG LDLLRKEFER YIVRRIKYPE DYEELGVDLE TGFLLYGPPG CGKTLIAKAV ANEAGATFIH IKGPELLNKY VGESELAVRT
601: MFSRARTCAP CILFFDEIDA LTTKRGKEGG WVVERLLNQL LVELDGAEQR KGVFVIGATN RPEVMDRAVL RPGRFGKLLY VPLPSPDERV LILKALARKK
701: AVDASVDLSA IAKMEACENL SGADLAALMN EAAMAALEER LTSIETTCDT LTIKRTIKRH HFEVALSKVS PSVSDRQKQY YQHLSEGFKA A

Best Arabidopsis Sequence Match ( AT3G01610.2 )
(BLAST)

001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE DEIEKARTKS

Arabidopsis Description

CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.