CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06311	Soybean	cytosol	100.0	100.0
Os02t0784700-00	Rice	cytosol	43.9	99.47
KRH69005	Soybean	nucleus	99.3	99.3
KRG97280	Soybean	cytosol, nucleus	99.3	99.3
GSMUA_AchrUn_...	Banana	cytosol	41.08	98.31
Solyc06g063140.2.1	Tomato	cytosol, extracellular, nucleus, plastid	97.89	97.2
KRH06953	Soybean	cytosol	48.59	76.67
KRH46990	Soybean	nucleus	44.6	45.45
KRH44668	Soybean	cytosol, mitochondrion, nucleus	44.37	45.22
KRH61120	Soybean	endoplasmic reticulum	38.73	41.46
KRH51796	Soybean	cytosol	38.73	41.46
KRH05868	Soybean	cytosol, nucleus	38.5	41.1
KRH15139	Soybean	cytosol, endoplasmic reticulum, nucleus	38.26	40.85
KRG92899	Soybean	cytosol, nucleus	38.97	39.24
KRH33891	Soybean	endoplasmic reticulum, nucleus	38.97	39.24
KRH30674	Soybean	cytosol, nucleus	37.09	38.26
KRH68501	Soybean	nucleus	37.79	37.88
KRG98107	Soybean	cytosol	37.09	37.44
KRH19693	Soybean	cytosol	38.73	37.25
KRH32292	Soybean	cytosol, nucleus	38.73	37.25
KRG95799	Soybean	cytosol, nucleus	38.97	37.22
KRH67524	Soybean	nucleus	38.97	37.22
KRH30673	Soybean	cytosol, nucleus	36.85	37.12
KRH45565	Soybean	endoplasmic reticulum	17.14	35.78
KRH51488	Soybean	mitochondrion	35.21	35.46
KRG96790	Soybean	mitochondrion	27.23	34.94
KRG99061	Soybean	cytosol	15.49	33.0
KRH00031	Soybean	plastid	23.47	28.99
KRG94277	Soybean	cytosol	13.38	27.54
KRH45638	Soybean	cytosol	16.9	22.43
KRH70928	Soybean	cytosol	26.76	18.81
KRH25081	Soybean	cytosol, endoplasmic reticulum, mitochondrion	30.28	17.82
KRH67721	Soybean	endoplasmic reticulum, nucleus	33.33	17.57
KRG96011	Soybean	endoplasmic reticulum, mitochondrion, nucleus	33.33	17.57
KRH19916	Soybean	endoplasmic reticulum, mitochondrion	33.33	17.51
KRH26511	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	33.1	17.47
KRH22853	Soybean	cytosol, endoplasmic reticulum, mitochondrion	33.1	17.47
KRH32530	Soybean	endoplasmic reticulum, mitochondrion	33.33	17.47
KRH63585	Soybean	endoplasmic reticulum	33.33	17.44
KRH54357	Soybean	cytosol, endoplasmic reticulum, mitochondrion	33.33	17.44
KRH30601	Soybean	cytosol	32.86	17.37
KRH44049	Soybean	nucleus	27.93	15.04
KRH10420	Soybean	mitochondrion	17.14	14.75
KRH66707	Soybean	plastid	31.69	12.91
KRG96401	Soybean	mitochondrion	27.7	12.84
KRH68139	Soybean	cytosol	19.25	12.24
KRG95054	Soybean	plastid	16.67	9.21
KRH50491	Soybean	cytosol	23.94	9.03

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100779787	EntrezGene:100820271	MapMan:19.2.6.2.1.1	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like
Gene3D:3.40.50.300	UniProt:A0A0R4J3N1	InterPro:AAA+_ATPase	EMBL:ACUP02004161	EMBL:ACUP02009825	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	ncoils:Coil	EnsemblPlantsGene:GLYMA_07G046700	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163
ProteinID:KRH06311.1	EnsemblPlants:KRH47728	ProteinID:KRH47728	ProteinID:KRH47728.1	InterPro:P-loop_NTPase	PFAM:PF00004
ScanProsite:PS00674	PANTHER:PTHR23073	PANTHER:PTHR23073:SF60	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242
UniParc:UPI000189D0C1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:3905797..3909524

Molecular Weight (calculated)

47713.8 Da

IEP (calculated)

6.343

GRAVY (calculated)

-0.416

Length

426 amino acids

Sequence
(BLAST)

001: MAIEHEDDLK DEKNPRPLDE DDIALLKTYG LGPYSTSIKK AEKEIKDMAK KVNDLCGIKE SDTGLAAPSQ WDLVSDKQMM QEEQPLQVAR CTKIINPNSE
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN

Best Arabidopsis Sequence Match ( AT1G53750.1 )
(BLAST)

001: MVRDIEDEIR DEKNPRPLDE DDIALLKTYG LGPYSAPIKK VEKEIKDLAK KINDLCGIKE SDTGLAPPSQ WDLVSDKQMM QEEQPLQVAR CTKIISPNTE
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN

Arabidopsis Description

RPT1ARPT1A [Source:UniProtKB/TrEMBL;Acc:A0A178W3N8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.