CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30673	Soybean	cytosol, nucleus	98.82	98.58
VIT_06s0004g08220.t01	Wine grape	cytosol	95.26	96.17
Bra020378.1-P	Field mustard	cytosol	91.47	95.54
CDY02806	Canola	cytosol	91.47	95.54
CDY32714	Canola	cytosol	91.47	95.54
CDY58566	Canola	cytosol	91.47	95.54
HORVU2Hr1G107280.1	Barley	cytosol	83.65	95.41
Bra002662.1-P	Field mustard	cytosol	91.23	95.3
CDY32995	Canola	cytosol, extracellular	91.23	95.3
CDX88666	Canola	cytosol	91.23	95.3
CDY43865	Canola	cytosol	91.23	95.3
KRH30674	Soybean	cytosol, nucleus	93.13	95.16
Bra006775.1-P	Field mustard	cytosol	88.15	95.14
AT5G58290.1	Thale cress	cytosol	91.23	94.36
HORVU2Hr1G014000.1	Barley	cytosol	88.15	90.73
Os02t0325100-01	Rice	plastid	89.34	89.98
TraesCS2D01G476000.1	Wheat	cytosol	88.86	89.93
TraesCS2B01G499600.1	Wheat	cytosol	88.86	89.93
TraesCS2D01G083900.1	Wheat	golgi	88.39	89.88
TraesCS2A01G086400.1	Wheat	cytosol	88.39	89.88
HORVU3Hr1G067470.2	Barley	cytosol	48.34	89.87
TraesCS2B01G100400.1	Wheat	cytosol, plastid	88.15	89.64
KXG39890	Sorghum	cytosol	88.86	89.29
TraesCS2A01G475900.1	Wheat	cytosol	88.86	87.82
Zm00001d050616_P002	Maize	plastid	88.63	86.18
EER91182	Sorghum	cytosol	81.99	82.38
GSMUA_Achr7P21960_001	Banana	cytosol	91.94	80.17
Zm00001d015886_P002	Maize	cytosol	76.78	59.78
KRH19693	Soybean	cytosol	44.79	42.66
KRH32292	Soybean	cytosol, nucleus	44.79	42.66
KRH67524	Soybean	nucleus	45.02	42.6
KRG95799	Soybean	cytosol, nucleus	44.79	42.38
KRH45565	Soybean	endoplasmic reticulum	19.43	40.2
KRH51796	Soybean	cytosol	36.73	38.94
KRH61120	Soybean	endoplasmic reticulum	36.73	38.94
KRH05868	Soybean	cytosol, nucleus	36.73	38.85
KRH15139	Soybean	cytosol, endoplasmic reticulum, nucleus	36.73	38.85
KRH46990	Soybean	nucleus	38.39	38.76
KRH44668	Soybean	cytosol, mitochondrion, nucleus	38.39	38.76
KRH33891	Soybean	endoplasmic reticulum, nucleus	37.68	37.59
KRG92899	Soybean	cytosol, nucleus	37.68	37.59
KRH69005	Soybean	nucleus	37.44	37.09
KRH47728	Soybean	cytosol, nucleus	37.44	37.09
KRG97280	Soybean	cytosol, nucleus	37.44	37.09
KRH06311	Soybean	cytosol	37.44	37.09
KRH06953	Soybean	cytosol	23.7	37.04
KRH68501	Soybean	nucleus	36.02	35.76
KRH51488	Soybean	mitochondrion	33.41	33.33
KRG96790	Soybean	mitochondrion	26.07	33.13
KRH00031	Soybean	plastid	24.41	29.86
KRG99061	Soybean	cytosol	13.03	27.5
KRG94277	Soybean	cytosol	12.09	24.64
KRH45638	Soybean	cytosol	15.17	19.94
KRH70928	Soybean	cytosol	26.54	18.48
KRH25081	Soybean	cytosol, endoplasmic reticulum, mitochondrion	27.25	15.88
KRH67721	Soybean	endoplasmic reticulum, nucleus	30.33	15.84
KRH19916	Soybean	endoplasmic reticulum, mitochondrion	30.33	15.78
KRH54357	Soybean	cytosol, endoplasmic reticulum, mitochondrion	30.33	15.72
KRG96011	Soybean	endoplasmic reticulum, mitochondrion, nucleus	30.09	15.72
KRH32530	Soybean	endoplasmic reticulum, mitochondrion	30.09	15.62
KRH63585	Soybean	endoplasmic reticulum	30.09	15.6
KRH30601	Soybean	cytosol	29.62	15.51
KRH26511	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	29.62	15.49
KRH22853	Soybean	cytosol, endoplasmic reticulum, mitochondrion	29.62	15.49
KRH10420	Soybean	mitochondrion	18.01	15.35
KRH44049	Soybean	nucleus	27.73	14.79
KRG96401	Soybean	mitochondrion	26.3	12.08
KRH66707	Soybean	plastid	28.44	11.47
KRH68139	Soybean	cytosol	16.59	10.45
KRH50491	Soybean	cytosol	24.88	9.29
KRG95054	Soybean	plastid	14.46	7.91

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100783650	MapMan:19.2.6.2.1.3	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300
UniProt:A0A0R0EW30	InterPro:AAA+_ATPase	EMBL:ACUP02010844	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil
EnsemblPlantsGene:GLYMA_18G050900	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	GO:GO:0036402
GO:GO:1901800	EnsemblPlants:KRG98107	ProteinID:KRG98107	ProteinID:KRG98107.1	InterPro:P-loop_NTPase	PFAM:PF00004
ScanProsite:PS00674	InterPro:PSMC4	PANTHER:PTHR23073	PANTHER:PTHR23073:SF8	SMART:SM00382	SUPFAM:SSF52540
TIGRFAMs:TIGR01242	UniParc:UPI0001D62E57	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:4408183..4412721

Molecular Weight (calculated)

47318.6 Da

IEP (calculated)

5.262

GRAVY (calculated)

-0.403

Length

422 amino acids

Sequence
(BLAST)

001: MGSSAMVLDP KPSSEPPPFL PSTKSDYLQG SFGGDATASD EDDLYSRLKS LQRQLEFIDI QEEYVKDEQK NLKRELLRAQ EEVKRIQSVP LVIGQFMEMV
101: DQNNGIVGST TGSNYYVRIL STINRELLKP SASVALHRHS NALVDVLPPE ADSSISLLSQ SEKPDVTYND IGGCDIQKQE IREAVELPLT HHELYKQIGI
201: DPPRGVLLYG PPGTGKTMLA KAVANHTTAA FIRVVGSEFV QKYLGEGPRM VRDVFRLAKE NAPAIIFIDE VDAIATARFD AQTGADREVQ RILMELLNQM
301: DGFDQTVNVK VIMATNRADT LDPALLRPGR LDRKIEFPLP DRRQKRLVFQ VCTAKMNLSD EVDLEDYVSR PDKISAAEIA AICQEAGMHA VRKNRYVILP
401: KDFEKGYRTN VKKPDTDFEF YK

Best Arabidopsis Sequence Match ( AT5G58290.1 )
(BLAST)

001: MASAAVASMV LDPKASPALM DLSTADEEDL YGRLKSLERQ LEFTDIQEEY VKDEQKNLKR ELLRAQEEVK RIQSVPLVIG QFMEMVDQNN GIVGSTTGSN
101: YYVRILSTIN RELLKPSASV ALHRHSNALV DVLPPEADSS ISLLSQSEKP DVSYNDIGGC DIQKQEIREA VELPLTHHEL YKQIGIDPPR GVLLYGPPGT
201: GKTMLAKAVA NHTTAAFIRV VGSEFVQKYL GEGPRMVRDV FRLAKENAPA IIFIDEVDAI ATARFDAQTG ADREVQRILM ELLNQMDGFD QTVNVKVIMA
301: TNRADTLDPA LLRPGRLDRK IEFPLPDRRQ KRLVFQVCTS KMNLSDEVDL EDYVSRPDKI SAAEIAAICQ EAGMHAVRKN RYVILPKDFE KGYRANVKKP
401: DTDFEFYK

Arabidopsis Description

RPT3RPT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UAH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.