Factsheet for VIT_06s0004g08220.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G107280.1	Barley	cytosol	84.45	95.41
KRG98107	Soybean	cytosol	96.17	95.26
Bra002662.1-P	Field mustard	cytosol	91.87	95.05
CDY58566	Canola	cytosol	91.87	95.05
CDY43865	Canola	cytosol	91.87	95.05
CDY32995	Canola	cytosol, extracellular	91.87	95.05
CDY32714	Canola	cytosol	91.87	95.05
CDY02806	Canola	cytosol	91.87	95.05
Bra020378.1-P	Field mustard	cytosol	91.87	95.05
CDX88666	Canola	cytosol	91.63	94.8
Bra006775.1-P	Field mustard	cytosol	88.52	94.63
KRH30673	Soybean	cytosol, nucleus	95.69	94.56
AT5G58290.1	Thale cress	cytosol	91.87	94.12
Solyc06g082660.2.1	Tomato	cytosol, nucleus	91.87	92.75
Solyc06g082630.2.1	Tomato	cytosol, plastid	91.63	92.51
PGSC0003DMT400078301	Potato	cytosol	91.15	92.03
PGSC0003DMT400053010	Potato	cytosol	90.91	92.01
HORVU2Hr1G014000.1	Barley	cytosol	89.23	90.98
TraesCS2D01G083900.1	Wheat	golgi	89.71	90.36
TraesCS2A01G086400.1	Wheat	cytosol	89.71	90.36
TraesCS2B01G499600.1	Wheat	cytosol	89.95	90.17
TraesCS2D01G476000.1	Wheat	cytosol	89.95	90.17
TraesCS2B01G100400.1	Wheat	cytosol, plastid	89.47	90.12
Os02t0325100-01	Rice	plastid	90.19	89.98
HORVU3Hr1G067470.2	Barley	cytosol	48.8	89.87
KXG39890	Sorghum	cytosol	89.95	89.52
TraesCS2A01G475900.1	Wheat	cytosol	89.95	88.06
Zm00001d050616_P002	Maize	plastid	89.95	86.64
EER91182	Sorghum	cytosol	83.01	82.62
GSMUA_Achr7P21960_001	Banana	cytosol	91.63	79.13
Zm00001d015886_P002	Maize	cytosol	77.75	59.96
VIT_07s0005g05160.t01	Wine grape	cytosol	44.74	42.02
VIT_18s0001g13090.t01	Wine grape	cytosol	37.08	38.94
VIT_03s0038g04350.t01	Wine grape	cytosol	37.08	38.85
VIT_14s0060g02260.t01	Wine grape	cytosol	36.84	38.02
VIT_09s0002g05800.t01	Wine grape	cytosol	37.8	37.89
VIT_04s0008g04690.t01	Wine grape	cytosol	37.8	37.62
VIT_05s0020g01180.t01	Wine grape	cytosol	38.04	37.59
VIT_09s0002g00170.t01	Wine grape	cytosol	37.56	36.85
VIT_11s0016g00230.t01	Wine grape	cytosol	36.84	36.24
VIT_06s0061g00340.t01	Wine grape	cytosol	29.67	16.21
VIT_08s0040g01480.t01	Wine grape	cytosol	30.14	15.63
VIT_17s0000g08890.t01	Wine grape	cytosol	29.9	15.36
VIT_01s0010g02600.t01	Wine grape	cytosol	28.23	14.3
VIT_07s0104g01610.t01	Wine grape	cytosol	27.03	12.05
VIT_08s0040g00910.t01	Wine grape	cytosol	27.75	10.95
VIT_00s0125g00170.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	25.84	9.52

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100246786	wikigene:100246786	MapMan:19.2.6.2.1.3	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like
Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ProteinID:CCB43391	ProteinID:CCB43391.1
ncoils:Coil	UniProt:F6GU75	EMBL:FN594951	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008540	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0017025	GO:GO:0019538	GO:GO:0030163	GO:GO:0030433	GO:GO:0031595
GO:GO:0031597	GO:GO:0036402	GO:GO:0045899	GO:GO:1901800	EntrezGene:LOC100246786	wikigene:LOC100246786
InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	InterPro:PSMC4	PANTHER:PTHR23073	PANTHER:PTHR23073:SF8
SMART:SM00382	SUPFAM:SSF52540	TIGR:TC62813	TIGRFAMs:TIGR01242	UniParc:UPI00015C7FBE	ArrayExpress:VIT_06s0004g08220
EnsemblPlantsGene:VIT_06s0004g08220	EnsemblPlants:VIT_06s0004g08220.t01	unigene:Vvi.7717	RefSeq:XP_002276130	RefSeq:XP_002276130.2	SEG:seg

Description

No Description!

Coordinates

chr6:-:8989690..8995532

Molecular Weight (calculated)

47057.2 Da

IEP (calculated)

5.265

GRAVY (calculated)

-0.416

Length

418 amino acids

Sequence
(BLAST)

001: MAVVLEPKPS SEPPPSFPST RSDIQGFSDQ SSSFSDEDDL YGRLKSLQRQ LEFIDIQEEY VKDEQKNLKR ELLRAQEEVK RIQSVPLVIG QFMEMVDQNN
101: GIVGSTTGSN YYVRILSTIN RELLKPSASV ALHRHSNALV DVLPPEADSS ISLLSQSEKP DVTYNDIGGC DIQKQEIREA VELPLTHHEL YKQIGIDPPR
201: GVLLYGPPGT GKTMLAKAVA NHTTAAFIRV VGSEFVQKYL GEGPRMVRDV FRLAKENAPA IIFIDEVDAI ATARFDAQTG ADREVQRILM ELLNQMDGFD
301: QTVNVKVIMA TNRADTLDPA LLRPGRLDRK IEFPLPDRRQ KRLVFQVCTA KMNLSDEVDL EDYVSRPDKI SAAEIAAICQ EAGMHAVRKN RYVILPKDFE
401: KGYRTNVKKP DTDFEFYK

Best Arabidopsis Sequence Match ( AT5G58290.1 )
(BLAST)

001: MASAAVASMV LDPKASPALM DLSTADEEDL YGRLKSLERQ LEFTDIQEEY VKDEQKNLKR ELLRAQEEVK RIQSVPLVIG QFMEMVDQNN GIVGSTTGSN
101: YYVRILSTIN RELLKPSASV ALHRHSNALV DVLPPEADSS ISLLSQSEKP DVSYNDIGGC DIQKQEIREA VELPLTHHEL YKQIGIDPPR GVLLYGPPGT
201: GKTMLAKAVA NHTTAAFIRV VGSEFVQKYL GEGPRMVRDV FRLAKENAPA IIFIDEVDAI ATARFDAQTG ADREVQRILM ELLNQMDGFD QTVNVKVIMA
301: TNRADTLDPA LLRPGRLDRK IEFPLPDRRQ KRLVFQVCTS KMNLSDEVDL EDYVSRPDKI SAAEIAAICQ EAGMHAVRKN RYVILPKDFE KGYRANVKKP
401: DTDFEFYK

Arabidopsis Description

RPT3RPT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UAH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.