Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_05s0020g01180.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G45000.1 | VIT_05s0020g01180.t01 | AT1G09100.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH51796 | Soybean | cytosol | 96.23 | 96.23 |
| KRH61120 | Soybean | endoplasmic reticulum | 96.23 | 96.23 |
| VIT_03s0038g04350.t01 | Wine grape | cytosol | 95.98 | 95.74 |
| GSMUA_AchrUn_... | Banana | cytosol | 95.98 | 95.26 |
| KRH05868 | Soybean | cytosol, nucleus | 95.48 | 95.24 |
| KRH15139 | Soybean | cytosol, endoplasmic reticulum, nucleus | 95.23 | 94.99 |
| AT1G45000.1 | Thale cress | cytosol | 94.22 | 93.98 |
| CDY02428 | Canola | cytosol, extracellular | 93.97 | 93.73 |
| CDY22373 | Canola | cytosol | 93.97 | 93.73 |
| Bra035338.1-P | Field mustard | cytosol | 93.97 | 93.73 |
| TraesCS6D01G149500.1 | Wheat | cytosol | 84.67 | 93.61 |
| CDY25226 | Canola | cytosol | 93.72 | 93.48 |
| CDX71534 | Canola | cytosol | 93.72 | 93.48 |
| Bra033655.1-P | Field mustard | cytosol | 93.72 | 93.48 |
| EES06471 | Sorghum | cytosol | 93.47 | 93.0 |
| Zm00001d053649_P002 | Maize | cytosol, mitochondrion | 93.47 | 93.0 |
| AT5G43010.1 | Thale cress | cytosol | 93.22 | 92.98 |
| GSMUA_Achr7P17620_001 | Banana | cytosol | 95.73 | 92.93 |
| Zm00001d015788_P001 | Maize | plasma membrane | 92.96 | 92.5 |
| TraesCS6A01G162700.2 | Wheat | cytosol, golgi | 92.96 | 92.5 |
| TraesCS6B01G188500.1 | Wheat | cytosol | 92.96 | 92.5 |
| Os02t0199900-01 | Rice | nucleus, plasma membrane | 92.71 | 92.25 |
| GSMUA_Achr4P03720_001 | Banana | cytosol | 92.21 | 92.21 |
| TraesCS7D01G375500.1 | Wheat | cytosol | 90.7 | 90.25 |
| TraesCS7B01G280400.1 | Wheat | cytosol, unclear | 90.7 | 90.25 |
| TraesCS7A01G378600.1 | Wheat | cytosol | 90.7 | 90.25 |
| Os06t0607800-01 | Rice | nucleus | 90.7 | 90.02 |
| Zm00001d046539_P002 | Maize | cytosol, mitochondrion | 89.95 | 89.95 |
| EER88627 | Sorghum | cytosol | 89.95 | 89.95 |
| HORVU6Hr1G032570.5 | Barley | cytosol | 89.7 | 87.29 |
| HORVU7Hr1G090380.3 | Barley | cytosol | 90.7 | 82.8 |
| TraesCS7D01G532000.1 | Wheat | cytosol | 76.88 | 76.88 |
| TraesCS7B01G468900.1 | Wheat | cytosol | 75.88 | 75.88 |
| TraesCS7A01G545700.1 | Wheat | cytosol | 75.88 | 75.88 |
| HORVU7Hr1G119300.13 | Barley | cytosol | 76.63 | 75.87 |
| CDY20370 | Canola | cytosol | 45.23 | 66.91 |
| CDY39032 | Canola | cytosol | 38.94 | 61.75 |
| KRH00031 | Soybean | plastid | 51.51 | 59.42 |
| CDY39033 | Canola | cytosol | 59.3 | 58.13 |
| CDY20371 | Canola | cytosol, plastid | 58.79 | 53.18 |
| VIT_04s0008g04690.t01 | Wine grape | cytosol | 43.47 | 41.19 |
| VIT_09s0002g05800.t01 | Wine grape | cytosol | 42.96 | 41.01 |
| VIT_14s0060g02260.t01 | Wine grape | cytosol | 39.7 | 39.01 |
| VIT_09s0002g00170.t01 | Wine grape | cytosol | 41.71 | 38.97 |
| VIT_05s0020g01180.t01 | Wine grape | cytosol | 40.45 | 38.06 |
| VIT_07s0005g05160.t01 | Wine grape | cytosol | 42.46 | 37.98 |
| VIT_11s0016g00230.t01 | Wine grape | cytosol | 40.45 | 37.88 |
| Bra008198.1-P | Field mustard | cytosol | 59.05 | 37.42 |
| VIT_06s0004g08220.t01 | Wine grape | cytosol | 38.94 | 37.08 |
| VIT_06s0061g00340.t01 | Wine grape | cytosol | 34.17 | 17.78 |
| VIT_08s0040g01480.t01 | Wine grape | cytosol | 34.67 | 17.12 |
| VIT_17s0000g08890.t01 | Wine grape | cytosol | 34.42 | 16.83 |
| VIT_01s0010g02600.t01 | Wine grape | cytosol | 30.4 | 14.67 |
| VIT_07s0104g01610.t01 | Wine grape | cytosol | 28.89 | 12.26 |
| VIT_08s0040g00910.t01 | Wine grape | cytosol | 31.66 | 11.9 |
| VIT_00s0125g00170.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 27.89 | 9.79 |
Protein Annotations
| Gene3D:1.10.8.60 | EntrezGene:100252341 | wikigene:100252341 | MapMan:19.2.6.2.1.4 | Gene3D:2.40.50.140 | InterPro:26S_Psome_P45-like |
| Gene3D:3.40.50.300 | UniProt:A5AEB9 | InterPro:AAA+_ATPase | EMBL:AM424422 | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core |
| ProteinID:CAN75568 | ProteinID:CAN75568.1 | ProteinID:CBI19754 | ProteinID:CBI19754.3 | ncoils:Coil | EMBL:FN595227 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0006139 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008540 | GO:GO:0009056 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0017025 | GO:GO:0019538 |
| GO:GO:0030163 | GO:GO:0030433 | GO:GO:0031595 | GO:GO:0031597 | GO:GO:0036402 | GO:GO:0045899 |
| GO:GO:1901800 | EntrezGene:LOC100252341 | wikigene:LOC100252341 | InterPro:P-loop_NTPase | PFAM:PF00004 | ScanProsite:PS00674 |
| PANTHER:PTHR23073 | PANTHER:PTHR23073:SF58 | SMART:SM00382 | SUPFAM:SSF52540 | TIGR:TC58269 | TIGRFAMs:TIGR01242 |
| UniParc:UPI000151E686 | ArrayExpress:VIT_18s0001g13090 | EnsemblPlantsGene:VIT_18s0001g13090 | EnsemblPlants:VIT_18s0001g13090.t01 | unigene:Vvi.12353 | RefSeq:XP_002281107 |
| RefSeq:XP_002281107.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr18:-:11169585..11174073
Molecular Weight (calculated)
44538.0 Da
IEP (calculated)
8.425
GRAVY (calculated)
-0.359
Length
398 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDGEDAVRR RSVLADYRKK LLHHKELDSR VRSVRESLRG AKKEFNKTED DLKSLQSVGQ IIGEVLRPLD NERLIVKASS GPRYVVGCRS KVDKEKLTSG
101: TRVVLDMTTL TIMRALPREV DPVVYNMLHE DPGNVSYSAV GGLSDQIREL RESIELPLMN PELFLRVGIK PPKGVLLYGP PGTGKTLLAR AIASNIDANF
201: LKVVSSAIID KYIGESARLI REMFGYARDH QPCIIFMDEI DAIGGRRFSE GTSADREIQR TLMELLNQLD GFDQLGKVKM IMATNRPDVL DPALLRPGRL
301: DRKIEIPLPN EQSRMEILKI HAAGIAKHGE IDYEAVVKLA EGFNGADLRN VCTEAGMSAI RAERDYVIHE DFMKAVRKLN EAKKLESSAH YNADFGKD
101: TRVVLDMTTL TIMRALPREV DPVVYNMLHE DPGNVSYSAV GGLSDQIREL RESIELPLMN PELFLRVGIK PPKGVLLYGP PGTGKTLLAR AIASNIDANF
201: LKVVSSAIID KYIGESARLI REMFGYARDH QPCIIFMDEI DAIGGRRFSE GTSADREIQR TLMELLNQLD GFDQLGKVKM IMATNRPDVL DPALLRPGRL
301: DRKIEIPLPN EQSRMEILKI HAAGIAKHGE IDYEAVVKLA EGFNGADLRN VCTEAGMSAI RAERDYVIHE DFMKAVRKLN EAKKLESSAH YNADFGKD
001: MSDGDDAARR RTAAVTDYRK KLLHHKELES RVRTARENLR AAKKEFNKTE DDLKSLQSVG QIIGEVLRPL DNERLIVKAS SGPRYVVGCR SKVDKEKLTS
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNISYSA VGGLGDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFNYARE HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDQLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMEILK IHASGIAKHG EIDYEAIVKL GEGFNGADLR NICTEAGMFA IRAERDYVIH EDFMKAVRKL SEAKKLESSS HYNADFGKE
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNISYSA VGGLGDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFNYARE HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDQLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMEILK IHASGIAKHG EIDYEAIVKL GEGFNGADLR NICTEAGMFA IRAERDYVIH EDFMKAVRKL SEAKKLESSS HYNADFGKE
Arabidopsis Description
RPT4B26S protease regulatory subunit S10B homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9MAK9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.