Factsheet for GSMUA_Achr4P03720_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P04520_001
GSMUA_Achr9P13230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43010.1	GSMUA_Achr5P04520_001	AT3G05530.1	21798944
AT5G43010.1	GSMUA_Achr9P13230_001	AT3G05530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51796	Soybean	cytosol	93.47	93.47
KRH61120	Soybean	endoplasmic reticulum	93.47	93.47
KRH05868	Soybean	cytosol, nucleus	92.71	92.48
KRH15139	Soybean	cytosol, endoplasmic reticulum, nucleus	92.46	92.23
VIT_18s0001g13090.t01	Wine grape	cytosol	92.21	92.21
GSMUA_AchrUn_...	Banana	cytosol	92.71	92.02
TraesCS6D01G149500.1	Wheat	cytosol	83.17	91.94
Os02t0199900-01	Rice	nucleus, plasma membrane	92.21	91.75
VIT_03s0038g04350.t01	Wine grape	cytosol	91.96	91.73
Zm00001d053649_P002	Maize	cytosol, mitochondrion	91.96	91.5
EES06471	Sorghum	cytosol	91.96	91.5
Zm00001d015788_P001	Maize	plasma membrane	91.96	91.5
Zm00001d046539_P002	Maize	cytosol, mitochondrion	91.46	91.46
TraesCS6B01G188500.1	Wheat	cytosol	91.71	91.25
Solyc01g109940.2.1	Tomato	nucleus	91.21	91.21
TraesCS6A01G162700.2	Wheat	cytosol, golgi	91.46	91.0
PGSC0003DMT400079514	Potato	cytosol	90.95	90.95
Os06t0607800-01	Rice	nucleus	91.46	90.77
TraesCS7A01G378600.1	Wheat	cytosol	91.21	90.75
TraesCS7B01G280400.1	Wheat	cytosol, unclear	91.21	90.75
TraesCS7D01G375500.1	Wheat	cytosol	91.21	90.75
EER88627	Sorghum	cytosol	90.45	90.45
AT5G43010.1	Thale cress	cytosol	89.95	89.72
AT1G45000.1	Thale cress	cytosol	89.7	89.47
GSMUA_Achr7P17620_001	Banana	cytosol	91.96	89.27
CDY02428	Canola	cytosol, extracellular	89.45	89.22
CDY25226	Canola	cytosol	89.45	89.22
Bra035338.1-P	Field mustard	cytosol	89.45	89.22
CDY22373	Canola	cytosol	88.69	88.47
CDX71534	Canola	cytosol	88.69	88.47
Bra033655.1-P	Field mustard	cytosol	88.69	88.47
HORVU6Hr1G032570.5	Barley	cytosol	88.19	85.82
Solyc10g054040.1.1	Tomato	cytosol, unclear	83.92	83.71
HORVU7Hr1G090380.3	Barley	cytosol	90.95	83.03
TraesCS7D01G532000.1	Wheat	cytosol	77.64	77.64
TraesCS7B01G468900.1	Wheat	cytosol	76.63	76.63
TraesCS7A01G545700.1	Wheat	cytosol	76.38	76.38
HORVU7Hr1G119300.13	Barley	cytosol	76.38	75.62
CDY20370	Canola	cytosol	44.47	65.8
KRH51488	Soybean	mitochondrion	69.85	65.72
CDY39032	Canola	cytosol	38.19	60.56
KRH00031	Soybean	plastid	51.01	58.84
CDY39033	Canola	cytosol	59.05	57.88
CDY20371	Canola	cytosol, plastid	58.54	52.95
GSMUA_AchrUn_...	Banana	cytosol	22.36	50.0
GSMUA_Achr6P12250_001	Banana	cytosol	34.92	45.87
GSMUA_Achr11P...	Banana	cytosol	36.43	44.48
GSMUA_Achr7P09950_001	Banana	cytosol	42.96	42.43
GSMUA_Achr10P...	Banana	cytosol	42.96	40.71
GSMUA_Achr4P05850_001	Banana	cytosol	41.46	38.92
GSMUA_AchrUn_...	Banana	cytosol	40.95	38.35
GSMUA_Achr8P16830_001	Banana	cytosol	40.95	38.35
GSMUA_Achr5P04520_001	Banana	cytosol	38.94	38.27
GSMUA_Achr4P05840_001	Banana	cytosol	40.45	38.24
GSMUA_Achr9P13230_001	Banana	cytosol	38.44	37.78
GSMUA_Achr3P04570_001	Banana	cytosol	39.95	37.59
Bra008198.1-P	Field mustard	cytosol	58.79	37.26
GSMUA_Achr7P21960_001	Banana	cytosol	38.69	31.82
GSMUA_Achr5P13290_001	Banana	cytosol	14.07	25.45
GSMUA_Achr3P00250_001	Banana	cytosol	10.3	20.92
GSMUA_Achr6P29120_001	Banana	cytosol	30.4	20.17
GSMUA_Achr6P11080_001	Banana	plastid	30.15	20.03
GSMUA_Achr7P04540_001	Banana	cytosol	33.42	16.84
GSMUA_Achr4P26800_001	Banana	cytosol	33.17	16.32
GSMUA_Achr5P15500_001	Banana	cytosol, plasma membrane	33.17	16.32
GSMUA_Achr9P23550_001	Banana	mitochondrion	32.16	15.88
GSMUA_Achr4P03560_001	Banana	mitochondrion	29.9	15.22
GSMUA_Achr3P00260_001	Banana	cytosol	16.33	13.32
GSMUA_Achr6P20030_001	Banana	cytosol	27.39	11.28
GSMUA_Achr11P...	Banana	cytosol	27.64	9.81

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.4	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0030163	GO:GO:0036402	GO:GO:1901800	EnsemblPlantsGene:GSMUA_Achr4G03720_001	EnsemblPlants:GSMUA_Achr4P03720_001	EnsemblPlants:GSMUA_Achr4T03720_001
UniProt:M0SKT9	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	InterPro:PSMC6	PANTHER:PTHR23073
PANTHER:PTHR23073:SF59	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242	UniParc:UPI000295D1E4	:

Description

26S protease regulatory subunit 10B homolog A [Source:GMGC_GENE;Acc:GSMUA_Achr4G03720_001]

Coordinates

chr4:-:2960679..2965742

Molecular Weight (calculated)

44594.1 Da

IEP (calculated)

7.965

GRAVY (calculated)

-0.319

Length

398 amino acids

Sequence
(BLAST)

001: MSEAEEAVRR RNALSEYRKQ LLNCKEIESR TRAVKDKLKA ARKEFTKTED DLKSLQSVGQ IIGEVLRPLD NERFIVKASS GPRYVVGCRS KVDKENLIAG
101: TRVVLDMTTL TIMRILPREV DPVVYNMLHE DPGNVSYSAV GGLSDQIREL RESIELPLMN PELFLRVGIK PPKGVLLYGP PGTGKTLLAR AIASNIDANF
201: LKVVSSAIID KYIGESARLI REMFNYARDH QPCIIFMDEI DAIGGRRFSE GTSADREIQR TLMELLNQLD GFDQLGKVKM IMATNRPDVL DPALLRPGRL
301: DRKIEIPLPN EQARMEVLKI HAAGIAKHGE IDYEAVVKLA EGFNGADLRN VCTEAGMAAI RAERDYVIHE DFMKAVRKLN EAKKLESSAH YSADFGKD

Best Arabidopsis Sequence Match ( AT5G43010.1 )
(BLAST)

001: MTDVDESVRR RTAAVSEYRK KLLQHKELES RVRTARENLR GAKKEFNKTE DDLKSLQSVG QIIGEVLRPL DNERLIVKAS SGPRYVVGCR SKVDKEKLTS
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNISYSA VGGLGDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFNYARE HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDNLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMDILK IHAAGIAKHG EIDYEAIVKL AEGFNGADLR NICTEAGMFA IRAERDYVIH EDFMKAVRKL SEAKKLESSS HYNADFGKE

Arabidopsis Description

RPT4A26S proteasome regulatory subunit 10B homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.