Factsheet for GSMUA_Achr7P04540_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P26800_001	Banana	cytosol	94.18	91.97
GSMUA_Achr5P15500_001	Banana	cytosol, plasma membrane	94.05	91.84
GSMUA_Achr9P23550_001	Banana	mitochondrion	91.39	89.58
VIT_17s0000g08890.t01	Wine grape	cytosol	90.51	87.84
GSMUA_Achr3P00250_001	Banana	cytosol	21.65	87.24
KRH63585	Soybean	endoplasmic reticulum	89.62	86.98
KRH54357	Soybean	cytosol, endoplasmic reticulum, mitochondrion	89.24	86.61
PGSC0003DMT400046624	Potato	cytosol	87.97	85.8
GSMUA_Achr3P00260_001	Banana	cytosol	52.41	84.84
Solyc03g112590.2.1	Tomato	cytosol, nucleus, plastid	87.59	83.27
GSMUA_Achr5P13290_001	Banana	cytosol	21.9	78.64
GSMUA_Achr6P29120_001	Banana	cytosol	29.24	38.5
GSMUA_Achr6P11080_001	Banana	plastid	28.99	38.23
GSMUA_Achr6P12250_001	Banana	cytosol	13.67	35.64
GSMUA_AchrUn_...	Banana	cytosol	17.72	34.91
GSMUA_AchrUn_...	Banana	cytosol	7.85	34.83
GSMUA_Achr7P17620_001	Banana	cytosol	17.72	34.15
GSMUA_Achr11P...	Banana	cytosol	13.92	33.74
GSMUA_Achr4P03720_001	Banana	cytosol	16.84	33.42
GSMUA_Achr4P03560_001	Banana	mitochondrion	32.91	33.25
GSMUA_AchrUn_...	Banana	cytosol	17.85	33.18
GSMUA_Achr8P16830_001	Banana	cytosol	17.72	32.94
GSMUA_Achr7P09950_001	Banana	cytosol	15.19	29.78
GSMUA_Achr5P04520_001	Banana	cytosol	15.19	29.63
GSMUA_Achr9P13230_001	Banana	cytosol	15.06	29.38
GSMUA_Achr10P...	Banana	cytosol	15.57	29.29
GSMUA_Achr4P05850_001	Banana	cytosol	15.32	28.54
GSMUA_Achr4P05840_001	Banana	cytosol	15.06	28.27
GSMUA_Achr3P04570_001	Banana	cytosol	15.06	28.13
GSMUA_Achr7P21960_001	Banana	cytosol	15.95	26.03
GSMUA_Achr6P20030_001	Banana	cytosol	27.72	22.67
GSMUA_Achr11P...	Banana	cytosol	26.58	18.73

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom	InterPro:Cdc48_dom2
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSMUA_Achr7G04540_001	EnsemblPlants:GSMUA_Achr7P04540_001
EnsemblPlants:GSMUA_Achr7T04540_001	UniProt:M0TEP4	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359	PFAM:PF02933
ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF122	SMART:SM00382	SMART:SM01072	SMART:SM01073
SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	UniParc:UPI0002955E07	SEG:seg	:

Description

Cell division cycle protein 48 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr7G04540_001]

Coordinates

chr7:-:3438502..3444365

Molecular Weight (calculated)

87610.5 Da

IEP (calculated)

5.040

GRAVY (calculated)

-0.374

Length

790 amino acids

Sequence
(BLAST)

001: MANHGEASSS SEPKGAKKDF STAILERKKA ANRLIVDEAI NDDNSVVSLN PETMEKLQLF RGDTVLLKGK KRRDTICIAL ADDTCEEPKI RMNKVVRSNL
101: RVRLGDVVSV HQCQDVKYGK RVHILPVDDT IEGITGNLFD VYLKSYFLEA YRPVRKGDLF LVRGGMRSVE FKVIETDPPE YCVVAPDTEI FCEGEPIKRE
201: DEERLDEVGY DDVGGVRKQM AQIRELVELP LRHPQLFKSI GVKPPKGILL YGPPGSGKTL IARAVANETG AFFFCINGPE IMSKLAGESE SNLRKAFEEA
301: EKNAPSIIFI DELDSIAPKR EKTHGEVERR IVSQLLTLMD GLKARSHVIV IGATNRPNSI DPALRRFGRF DREIDIGVPD EVGRLEVLRI HTKNMKLAED
401: VDLERIAKDT HGYVGADLAA LCTEAALQCI REKMDHFKTA LGTSNPSALR ETVVEVPNVS WDDIGGLENV KRELQETVQY PVEHPEKFEK FGMSPSKGVL
501: FYGPPGCGKT LLAKAIANEC QANFISVKGP ELLTMWFGES EANVREIFDK ARQSAPCVLF FDELDSIATQ RGSSVGDAGG AADRVLNQLL TEMDGMTAKK
601: TVFIIGATNR PDIIDPALLR PGRLDQLIYI PLPDEASRCQ IFKACLRKSP IAKDVDLMAL AKYTQGFSGA DITEICQRAC KYAIRENIEK DIERERRKSE
701: NPEAMEEDDA DEVAEIKAVH FEESMKFARR SVSDADIRKY QAFAQTLQQS RGFGTEFRFT DRADAGAGAT GSDPFAASGA AADDDDDLYS

Best Arabidopsis Sequence Match ( AT3G53230.1 )
(BLAST)

001: MANQAESSDS KGTKKDFSTA ILEKKKAANR LVVDEAINDD NSVVSLHPDT MEKLQLFRGD TILIKGKKRK DTVCIALADE TCDEPKIRMN KVVRSNLRVR
101: LGDVISVHQC PDVKYGNRVH ILPLDDTIEG VSGNIFDAYL KPYFLEAYRP VRKGDLFLVR GGMRSIEFKV IETDPAEYCV VAPDTEIFCE GEPIKREDEE
201: RLDEVGYDDV GGVRKQMAQI RELVELPLRH PQLFKSIGVK PPKGILLYGP PGSGKTLIAR AVANETGAFF FCINGPEIMS KLAGESESNL RKAFEEAEKN
301: APSIIFIDEI DSIAPKREKT HGEVERRIVS QLLTLMDGLK SRAHVIVMGA TNRPNSIDPA LRRFGRFDRE IDIGVPDEIG RLEVLRIHTK NMKLAEDVDL
401: ERVSKDTHGY VGADLAALCT EAALQCIREK MDVIDLDDEE IDAEILNSMA VSNDHFQTAL GNSNPSALRE TVVEVPNVSW EDIGGLENVK RELQETVQYP
501: VEHPEKFEKF GMSPSKGVLF YGPPGCGKTL LAKAIANECQ ANFISIKGPE LLTMWFGESE ANVREIFDKA RQSAPCVLFF DELDSIATQR GNSVGDAGGA
601: ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDPALLRP GRLDQLIYIP LPDEESRYQI FKSCLRKSPV AKDVDLRALA KYTQGFSGAD ITEICQRSCK
701: YAIRENIEKD IEKERKRAES PEAMEEDEEE IAEIKAGHFE ESMKYARRSV SDADIRKYQA FAQTLQQSRG FGSEFRFPDA PTGTTGAFPG AAATVGGVDP
801: FATSGGAADD DDLYS

Arabidopsis Description

CDC48DCell division control protein 48 homolog D [Source:UniProtKB/Swiss-Prot;Acc:Q9SCN8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.