Factsheet for GSMUA_Achr4P03560_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009592_P001	Maize	cytosol	22.12	66.03
CDY25624	Canola	cytosol	21.1	65.74
Zm00001d045566_P001	Maize	cytosol, mitochondrion	63.81	64.97
EER87717	Sorghum	cytosol	64.19	64.77
Zm00001d035913_P002	Maize	cytosol, mitochondrion	60.61	64.67
Os06t0109400-01	Rice	cytosol	63.04	64.03
TraesCS4A01G463300.1	Wheat	mitochondrion	61.89	61.66
TraesCS7D01G023600.1	Wheat	mitochondrion	61.89	61.66
VIT_01s0010g02600.t01	Wine grape	cytosol	64.96	61.58
TraesCS7A01G025800.1	Wheat	mitochondrion	61.76	61.53
TraesCS5D01G081900.1	Wheat	mitochondrion	58.44	61.51
KRH44049	Soybean	nucleus	62.15	61.44
Zm00001d022096_P002	Maize	mitochondrion	57.67	59.58
PGSC0003DMT400046254	Potato	cytosol	62.4	59.37
Solyc01g068330.2.1	Tomato	nucleus	62.02	59.07
TraesCS3B01G487900.1	Wheat	mitochondrion	56.27	59.06
HORVU7Hr1G002880.2	Barley	plastid	60.49	59.05
Zm00001d027244_P001	Maize	cytosol	27.49	58.74
TraesCS3A01G450800.1	Wheat	mitochondrion	55.75	58.45
TraesCS3D01G443600.1	Wheat	mitochondrion	55.88	58.42
Zm00001d002717_P001	Maize	mitochondrion	30.43	58.33
PGSC0003DMT400015455	Potato	mitochondrion	54.86	56.23
CDX74308	Canola	mitochondrion	49.62	54.96
Zm00001d053999_P001	Maize	cytosol	28.13	53.53
CDX91939	Canola	cytosol, mitochondrion	51.28	51.61
CDX84794	Canola	cytosol	48.08	50.61
Bra022833.1-P	Field mustard	cytosol	47.83	50.34
CDY23949	Canola	cytosol	46.04	49.66
AT3G01610.2	Thale cress	nucleus	52.43	49.4
Bra000999.1-P	Field mustard	cytosol, mitochondrion	52.17	48.98
KRH10420	Soybean	mitochondrion	30.43	48.08
CDY45794	Canola	nucleus	48.98	48.06
CDX89698	Canola	endoplasmic reticulum	40.66	45.76
GSMUA_Achr6P29120_001	Banana	cytosol	27.75	36.17
GSMUA_Achr6P11080_001	Banana	plastid	27.62	36.06
GSMUA_AchrUn_...	Banana	cytosol	8.06	35.39
GSMUA_Achr6P12250_001	Banana	cytosol	13.55	34.98
GSMUA_Achr11P...	Banana	cytosol	13.94	33.44
GSMUA_Achr7P04540_001	Banana	cytosol	33.25	32.91
GSMUA_Achr5P15500_001	Banana	cytosol, plasma membrane	33.89	32.76
GSMUA_Achr4P26800_001	Banana	cytosol	33.76	32.63
GSMUA_Achr9P23550_001	Banana	mitochondrion	32.74	31.76
GSMUA_Achr3P00260_001	Banana	cytosol	19.18	30.74
GSMUA_AchrUn_...	Banana	cytosol	15.73	30.67
GSMUA_Achr5P13290_001	Banana	cytosol	8.44	30.0
GSMUA_Achr4P03720_001	Banana	cytosol	15.22	29.9
GSMUA_Achr7P17620_001	Banana	cytosol	15.47	29.51
GSMUA_AchrUn_...	Banana	cytosol	15.86	29.18
GSMUA_Achr8P16830_001	Banana	cytosol	15.86	29.18
GSMUA_Achr4P05850_001	Banana	cytosol	15.73	29.01
GSMUA_Achr4P05840_001	Banana	cytosol	15.47	28.74
GSMUA_Achr7P09950_001	Banana	cytosol	14.58	28.29
GSMUA_Achr10P...	Banana	cytosol	14.96	27.86
GSMUA_Achr3P00250_001	Banana	cytosol	6.78	27.04
GSMUA_Achr5P04520_001	Banana	cytosol	13.94	26.91
GSMUA_Achr9P13230_001	Banana	cytosol	13.94	26.91
GSMUA_Achr3P04570_001	Banana	cytosol	13.81	25.53
GSMUA_Achr7P21960_001	Banana	cytosol	15.22	24.59
GSMUA_Achr6P20030_001	Banana	cytosol	24.42	19.77
GSMUA_Achr11P...	Banana	cytosol	24.42	17.04

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSMUA_Achr4G03560_001	EnsemblPlants:GSMUA_Achr4P03560_001
EnsemblPlants:GSMUA_Achr4T03560_001	UniProt:M0SKS3	InterPro:NVL2_nucleolin-bd	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF16725
ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF55	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI000294A8C8
SEG:seg	:	:	:	:	:

Description

Cell division control protein 48 homolog C [Source:GMGC_GENE;Acc:GSMUA_Achr4G03560_001]

Coordinates

chr4:+:2827826..2836690

Molecular Weight (calculated)

87138.4 Da

IEP (calculated)

7.256

GRAVY (calculated)

-0.447

Length

782 amino acids

Sequence
(BLAST)

001: MGKRLRRDSG RSPSSFSAAL LRRRIASSKV LSEEDGAFVD VDVVVQRLRS LYPDYSRVKL QPFTLHVRKT LDSFSRRPSS ATAKRLLRAE SEHLRRRIGK
101: RIPVSNSSDD DSATSSTDDS VFEAKVEPEF DLMKSMLRDS YGKGPKRVDK EERNVEMEVE KPRNMQPVVD GGSGVETPMS VEKGSSGGGS VMVDDVREQG
201: PRFRDLGGMK PVLEELMMEV IVPLCHPELP QRLGVRPMAG ILLHGPPGCG KTKLAHAIAN ETGAPFYKIS ATEIVSGVSG ASEENIRDLF KKAYRTAPSI
301: VFIDEIDAIA SKRENLQREM ERRIVTQLMT CMDESHQSLR STDTNSEPET SDRKPGYVLV IGATNRPDAV DQALRRPGRF DREIVLGVPD ENARLEILSV
401: LTRKLKLEGQ FNLFKIARST PGFVGADLAA LVNKAGNLAM KRIIDKRRSQ ISCELKEKDN DDWWRQPWDK EEVESLSITM VDFEEAVKMV QPSSRREGFS
501: SIPNVTWEDV GGLTSLRKEF DRYIVQRVKH PEAYEEFGVN LEAGFLLYGP PGCGKTLIAK AVANEAGANF IHIKGPELLN KYVGESELAV RTIFSRARTC
601: SPCILFFDEV DALTTKRGRE GGWVVERLLN QLLIELDGAD RRQGVYVIGA TNRPEVMDPA VLRPGRFGKV LYVPLPSSDE RQLILKALAQ KKPISADVDL
701: EALACTEQCN NLTGADLAAL MNEAAMAALE EKQDSIDQGI ENINPWLIKT SHFEHALQKI KPSVSEKERK NYEELSRKLG AS

Best Arabidopsis Sequence Match ( AT3G01610.1 )
(BLAST)

001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE

Arabidopsis Description

CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.