Factsheet for GSMUA_Achr9P23550_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P14850_001
GSMUA_Achr4P26800_001
GSMUA_Achr5P15500_001
GSMUA_Achr7P11620_001
GSMUA_Achr7P17210_001
GSMUA_Achr9P23550_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09840.1	GSMUA_Achr10P...	AT1G71830.1	15592873
AT3G09840.1	GSMUA_Achr10P...	AT1G71830.1	15592873
AT3G09840.1	GSMUA_Achr2P14850_001	AT1G71830.1	15592873
AT3G09840.1	GSMUA_Achr7P11620_001	AT1G71830.1	15592873
AT3G09840.1	GSMUA_Achr7P17210_001	AT1G71830.1	15592873
AT3G09840.1	GSMUA_AchrUn_...	AT1G71830.1	15592873
AT3G09840.1	GSMUA_Achr10P...	AT1G71830.1	16473966
AT3G09840.1	GSMUA_Achr10P...	AT1G71830.1	16473966
AT3G09840.1	GSMUA_Achr2P14850_001	AT1G71830.1	16473966
AT3G09840.1	GSMUA_Achr7P11620_001	AT1G71830.1	16473966
AT3G09840.1	GSMUA_Achr7P17210_001	AT1G71830.1	16473966
AT3G09840.1	GSMUA_AchrUn_...	AT1G71830.1	16473966
AT3G09840.1	GSMUA_Achr10P...	AT1G71830.1	16621602
AT3G09840.1	GSMUA_Achr10P...	AT1G71830.1	16621602
AT3G09840.1	GSMUA_Achr2P14850_001	AT1G71830.1	16621602
AT3G09840.1	GSMUA_Achr7P11620_001	AT1G71830.1	16621602
AT3G09840.1	GSMUA_Achr7P17210_001	AT1G71830.1	16621602
AT3G09840.1	GSMUA_AchrUn_...	AT1G71830.1	16621602
AT3G09840.1	GSMUA_Achr10P...	AT1G71830.1	17693538
AT3G09840.1	GSMUA_Achr10P...	AT1G71830.1	17693538
AT3G09840.1	GSMUA_Achr2P14850_001	AT1G71830.1	17693538
AT3G09840.1	GSMUA_Achr7P11620_001	AT1G71830.1	17693538
AT3G09840.1	GSMUA_Achr7P17210_001	AT1G71830.1	17693538
AT3G09840.1	GSMUA_AchrUn_...	AT1G71830.1	17693538
AT3G09840.1	GSMUA_Achr4P26800_001	AT3G09840.1	15592873
AT3G09840.1	GSMUA_Achr5P15500_001	AT3G09840.1	15592873
AT3G09840.1	GSMUA_Achr9P23550_001	AT3G09840.1	15592873
AT3G09840.1	GSMUA_Achr4P26800_001	AT3G09840.1	16621602
AT3G09840.1	GSMUA_Achr5P15500_001	AT3G09840.1	16621602
AT3G09840.1	GSMUA_Achr9P23550_001	AT3G09840.1	16621602
AT3G09840.1	GSMUA_Achr4P26800_001	AT3G09840.1	17693538
AT3G09840.1	GSMUA_Achr5P15500_001	AT3G09840.1	17693538
AT3G09840.1	GSMUA_Achr9P23550_001	AT3G09840.1	17693538

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P04540_001	Banana	cytosol	89.58	91.39
GSMUA_Achr4P26800_001	Banana	cytosol	90.94	90.61
GSMUA_Achr5P15500_001	Banana	cytosol, plasma membrane	90.57	90.23
VIT_08s0040g01480.t01	Wine grape	cytosol	89.83	89.83
KRH26511	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	88.83	88.72
KRH22853	Soybean	cytosol, endoplasmic reticulum, mitochondrion	88.71	88.6
PGSC0003DMT400027096	Potato	cytosol	88.46	88.24
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	88.34	88.12
Solyc06g074980.2.1	Tomato	nucleus	87.72	87.83
PGSC0003DMT400055513	Potato	cytosol	87.84	87.73
CDY13308	Canola	cytosol	88.09	87.65
PGSC0003DMT400031321	Potato	cytosol	87.47	87.58
Bra003123.1-P	Field mustard	cytosol	87.84	87.41
GSMUA_Achr3P00260_001	Banana	cytosol	52.85	87.3
CDY41316	Canola	cytosol, extracellular	87.72	87.28
CDY54618	Canola	cytosol	87.47	87.25
CDY11249	Canola	cytosol	86.35	87.22
CDY22207	Canola	cytosol	87.59	87.16
Bra034089.1-P	Field mustard	cytosol	87.59	87.16
Bra001297.1-P	Field mustard	cytosol	87.47	87.14
CDX73996	Canola	cytosol	87.47	87.14
CDY41581	Canola	cytosol	87.34	87.13
AT5G03340.1	Thale cress	cytosol	87.47	87.04
CDY07941	Canola	cytosol	87.34	87.02
Bra029795.1-P	Field mustard	cytosol	87.34	87.02
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	86.85	86.96
PGSC0003DMT400050662	Potato	cytosol	86.85	86.96
AT3G09840.1	Thale cress	cytosol	86.97	86.65
Solyc09g008070.2.1	Tomato	cytosol, unclear	86.48	86.26
AT3G53230.1	Thale cress	cytosol	87.1	86.14
CDX80862	Canola	cytosol, plastid	86.1	85.78
Bra006978.1-P	Field mustard	cytosol	85.98	85.45
GSMUA_Achr3P00250_001	Banana	cytosol	20.72	85.2
VIT_06s0061g00340.t01	Wine grape	cytosol	77.54	81.7
CDX67563	Canola	cytosol	85.61	78.5
GSMUA_Achr5P13290_001	Banana	cytosol	21.22	77.73
Bra005733.1-P	Field mustard	cytosol	88.09	64.31
GSMUA_Achr6P11080_001	Banana	plastid	27.05	36.39
GSMUA_Achr6P29120_001	Banana	cytosol	27.05	36.33
GSMUA_Achr6P12250_001	Banana	cytosol	13.4	35.64
GSMUA_AchrUn_...	Banana	cytosol	7.69	34.83
GSMUA_Achr11P...	Banana	cytosol	13.65	33.74
GSMUA_AchrUn_...	Banana	cytosol	16.5	33.17
GSMUA_Achr4P03560_001	Banana	mitochondrion	31.76	32.74
GSMUA_Achr7P17620_001	Banana	cytosol	16.63	32.68
GSMUA_Achr4P03720_001	Banana	cytosol	15.88	32.16
GSMUA_AchrUn_...	Banana	cytosol	16.75	31.76
GSMUA_Achr8P16830_001	Banana	cytosol	16.63	31.53
GSMUA_Achr7P09950_001	Banana	cytosol	14.76	29.53
GSMUA_Achr10P...	Banana	cytosol	15.26	29.29
GSMUA_Achr5P04520_001	Banana	cytosol	14.52	28.89
GSMUA_Achr9P13230_001	Banana	cytosol	14.52	28.89
GSMUA_Achr4P05850_001	Banana	cytosol	14.89	28.3
GSMUA_Achr4P05840_001	Banana	cytosol	14.64	28.03
GSMUA_Achr3P04570_001	Banana	cytosol	14.39	27.42
GSMUA_Achr7P21960_001	Banana	cytosol	15.26	25.41
GSMUA_Achr6P20030_001	Banana	cytosol	26.8	22.36
GSMUA_Achr11P...	Banana	cytosol	25.06	18.02

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom	InterPro:Cdc48_dom2
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSMUA_Achr9G23550_001	EnsemblPlants:GSMUA_Achr9P23550_001
EnsemblPlants:GSMUA_Achr9T23550_001	UniProt:M0U2W2	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359	PFAM:PF02933
ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF122	SMART:SM00382	SMART:SM01072	SMART:SM01073
SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	UniParc:UPI000294C834	SEG:seg	:

Description

Cell division cycle protein 48 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr9G23550_001]

Coordinates

chr9:+:28369640..28375535

Molecular Weight (calculated)

89676.0 Da

IEP (calculated)

4.970

GRAVY (calculated)

-0.371

Length

806 amino acids

Sequence
(BLAST)

001: MTLRASPSRC LRPDSVLGSR VLMANPGEAT SSSDDPKGTK RDYSTAILER KKAPNRLVVD EAINDDNSVV VLHPETMEKL QLFRGDTVLL KGKKRRDTIC
101: IALADDTCDE PKIRMNKVVR SNLRVRLGDV VSVHQCPDVK YGKRVHILPI DDTIEGITGN LFDAYLKPYF MEAYRPVRKG DLFLVRGGMR SVEFKVIETD
201: PPEYCIVSPE TEIFCDGEPI KREDEERLDE VGYDDVGGVR KQMAQIRELV ELPLRHPQLF KSIGVKPPKG ILLYGPPGSG KTLIARAVAN ETGAFFFSEK
301: NAPSIIFIDE IDSIAPKREK THGEVERRIV SQLLTLMDGL KARSHVIVIG ATNRPNSIDA ALRRFGRFDR EIDIGVPDEV GRLEVLRIHT KNMKLAEDVD
401: LEGIAKDTHG YVGADLAALC TEAALQCIRE KMDIIDLEDE SIDAEILNSM AVTNDHFKTA LGTSNPSALR ETVVEVPNVS WDDIGGLENV KRELQETVQY
501: PVEHPEKFEK FGMSPSKGVL FYGPPGCGKT LLAKAIANEC QANFISVKGP ELLTMWFGES EANVREIFDK ARQSAPCVLF FDELDSIATQ RGSHVGDAGG
601: AADRVLNQLL TEMDGMTAKK TVFIIGATNR PDIIDPALLR PGRLDQLIYI PLPDEDSRFQ IFKACLRKSP IAKDVDLRAL AKFTQGFSGA DITEICQRAC
701: KYAIRENIEK DIERERRRSE NPEAMEEDDA DEVAEIKAVH FEESMKFARR SVSDADIRKY QAFAQTLQQS RGFGTEFRFA ERAATTGSDP FGTPAAGADD
801: DDDLYS

Best Arabidopsis Sequence Match ( AT5G03340.1 )
(BLAST)

001: MSNEPESSDS KTKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPTTM EKLQLFRGDT ILIKGKKRKD TVCIALADET CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV SNEHFHTALG NSNPSALRET VVEVPNVSWE DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG NSAGDAGGAA
601: DRVLNQLLTE MDGMNAKKTV FIIGATNRPD IIDSALLRPG RLDQLIYIPL PDEDSRLNIF KACLRKSPVA KDVDVTALAK YTQGFSGADI TEICQRACKY
701: AIRENIEKDI ENERRRSQNP EAMEEDMVDD EVSEIRAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFDS TAGVGRTTGV AAADPFATSA
801: AAADDDDLYS

Arabidopsis Description

CDC48ECell division control protein 48 homolog E [Source:UniProtKB/Swiss-Prot;Acc:Q9LZF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.