Factsheet for Bra034089.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001297.1-P
Bra003911.1-P
Bra016112.1-P
Bra029795.1-P
Bra034089.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09840.1	Bra003911.1-P	AT1G71830.1	15592873
AT3G09840.1	Bra016112.1-P	AT1G71830.1	15592873
AT3G09840.1	Bra003911.1-P	AT1G71830.1	16473966
AT3G09840.1	Bra016112.1-P	AT1G71830.1	16473966
AT3G09840.1	Bra003911.1-P	AT1G71830.1	16621602
AT3G09840.1	Bra016112.1-P	AT1G71830.1	16621602
AT3G09840.1	Bra003911.1-P	AT1G71830.1	17693538
AT3G09840.1	Bra016112.1-P	AT1G71830.1	17693538
AT3G09840.1	Bra001297.1-P	AT3G09840.1	15592873
AT3G09840.1	Bra029795.1-P	AT3G09840.1	15592873
AT3G09840.1	Bra034089.1-P	AT3G09840.1	15592873
AT3G09840.1	Bra001297.1-P	AT3G09840.1	16621602
AT3G09840.1	Bra029795.1-P	AT3G09840.1	16621602
AT3G09840.1	Bra034089.1-P	AT3G09840.1	16621602
AT3G09840.1	Bra001297.1-P	AT3G09840.1	17693538
AT3G09840.1	Bra029795.1-P	AT3G09840.1	17693538
AT3G09840.1	Bra034089.1-P	AT3G09840.1	17693538

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07941	Canola	cytosol	99.26	99.38
Bra001297.1-P	Field mustard	cytosol	99.26	99.38
Bra029795.1-P	Field mustard	cytosol	99.14	99.26
AT3G09840.1	Thale cress	cytosol	98.15	98.27
PGSC0003DMT400027096	Potato	cytosol	92.59	92.82
VIT_08s0040g01480.t01	Wine grape	cytosol	92.35	92.8
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	92.47	92.7
Solyc06g074980.2.1	Tomato	nucleus	92.1	92.67
PGSC0003DMT400031321	Potato	cytosol	92.1	92.67
PGSC0003DMT400055513	Potato	cytosol	92.1	92.44
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	91.23	91.8
PGSC0003DMT400050662	Potato	cytosol	91.23	91.8
GSMUA_Achr5P15500_001	Banana	cytosol, plasma membrane	91.6	91.72
GSMUA_Achr4P26800_001	Banana	cytosol	90.99	91.1
Solyc09g008070.2.1	Tomato	cytosol, unclear	90.86	91.09
Zm00001d027707_P001	Maize	cytosol, plasma membrane	90.74	91.08
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	90.86	90.98
Zm00001d048409_P001	Maize	cytosol	90.12	90.8
Zm00001d014124_P001	Maize	cytosol, plasma membrane	90.86	90.75
Bra003123.1-P	Field mustard	cytosol	90.74	90.74
Zm00001d032859_P006	Maize	plasma membrane	90.74	90.74
Bra006978.1-P	Field mustard	cytosol	90.12	90.01
Os10t0442600-01	Rice	cytosol, nucleus, plasma membrane, plastid	21.11	87.69
GSMUA_Achr9P23550_001	Banana	mitochondrion	87.16	87.59
TraesCSU01G001000.1	Wheat	cytosol	86.17	86.92
VIT_06s0061g00340.t01	Wine grape	cytosol	79.88	84.58
TraesCS3B01G154400.1	Wheat	cytosol	82.1	84.39
TraesCS1B01G419200.1	Wheat	cytosol	81.6	83.78
HORVU0Hr1G006340.1	Barley	cytosol	81.48	83.76
TraesCS3A01G144500.1	Wheat	cytosol	55.06	83.68
TraesCS3B01G171200.1	Wheat	cytosol	81.11	83.38
TraesCS3A01G145100.1	Wheat	cytosol	81.11	83.27
TraesCS1B01G259200.1	Wheat	cytosol	80.99	83.14
TraesCS3B01G172100.1	Wheat	cytosol	80.99	83.04
TraesCS3B01G172000.1	Wheat	cytosol	80.37	83.04
TraesCS3B01G171400.1	Wheat	cytosol	74.44	82.94
KXG40206	Sorghum	cytosol	80.0	82.86
EER95525	Sorghum	cytosol	79.75	82.82
TraesCS3A01G145000.1	Wheat	cytosol	71.11	82.76
HORVU3Hr1G029450.1	Barley	cytosol	81.48	81.68
HORVU3Hr1G029440.1	Barley	cytosol	81.48	81.08
TraesCS3B01G171300.1	Wheat	cytosol	72.47	80.52
TraesCS1A01G248500.1	Wheat	cytosol	58.77	79.73
TraesCS5B01G323100.1	Wheat	cytosol	56.91	79.35
Bra005733.1-P	Field mustard	cytosol	94.81	69.57
Zm00001d032117_P001	Maize	cytosol	27.16	68.75
Bra005023.1-P	Field mustard	cytosol	12.22	41.42
Bra017378.1-P	Field mustard	cytosol	27.53	36.98
Bra033655.1-P	Field mustard	cytosol	16.91	34.34
Bra022833.1-P	Field mustard	cytosol	31.48	34.32
Bra035338.1-P	Field mustard	cytosol	16.67	33.83
Bra039688.1-P	Field mustard	cytosol	17.16	32.63
Bra030922.1-P	Field mustard	cytosol	17.16	32.63
Bra000999.1-P	Field mustard	cytosol, mitochondrion	33.33	32.41
Bra040569.1-P	Field mustard	cytosol	16.91	31.64
Bra020378.1-P	Field mustard	cytosol	15.19	30.45
Bra002662.1-P	Field mustard	cytosol	15.19	30.45
Bra006775.1-P	Field mustard	cytosol	14.44	29.92
Bra006529.1-P	Field mustard	cytosol	15.43	29.83
Bra002279.1-P	Field mustard	cytosol	15.19	29.36
Bra040214.1-P	Field mustard	cytosol	15.31	29.25
Bra039431.1-P	Field mustard	cytosol	15.31	29.25
Bra001152.1-P	Field mustard	cytosol	15.19	29.01
Bra011079.1-P	Field mustard	cytosol	15.8	28.89
Bra010342.1-P	Field mustard	cytosol	15.68	28.54
Bra007262.1-P	Field mustard	plastid	32.1	26.53
Bra024165.1-P	Field mustard	cytosol	9.51	23.84
Bra008198.1-P	Field mustard	cytosol	15.31	19.75
Bra009342.1-P	Field mustard	cytosol	25.68	18.55
Bra020079.1-P	Field mustard	cytosol	15.93	17.89
Bra032565.1-P	Field mustard	mitochondrion	27.78	12.07
Bra006530.1-P	Field mustard	cytosol, nucleus, plastid	0.86	3.17

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	EnsemblPlantsGene:Bra034089	EnsemblPlants:Bra034089.1
EnsemblPlants:Bra034089.1-P	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom	InterPro:Cdc48_dom2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	UniProt:M4EZ46	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF02359	PFAM:PF02933	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF127
SMART:SM00382	SMART:SM01072	SMART:SM01073	SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585
TIGRFAMs:TIGR01243	UniParc:UPI00025441B6	SEG:seg	:	:	:

Description

AT3G09840 (E=0.0) CDC48, ATCDC48, CDC48A | CDC48 (CELL DIVISION CYCLE 48); ATPase/ identical protein binding

Coordinates

chrA01:-:27519091..27522036

Molecular Weight (calculated)

89584.5 Da

IEP (calculated)

4.825

GRAVY (calculated)

-0.378

Length

810 amino acids

Sequence
(BLAST)

001: MSNPAESSDS KSKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPATM EKLQLFRGDT ILIKGKKRKD TICIALADES CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGQRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV TNEHFHTALG NSNPSALRET VVEVPNVSWD DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG GGGGGDAGGA
601: ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDSALLRP GRLDQLIYIP LPDEDSRLNI FKACLRKSPV AKDVDINALA KYTQGFSGAD ITEICQRACK
701: YAIRENIEKD IEKEKRRSEN PEAMEEDGVD EVSEIKAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFET NAAGSGATTG VADPFATSAA
801: AAADDDDLYN

Best Arabidopsis Sequence Match ( AT3G09840.1 )
(BLAST)

001: MSTPAESSDS KSKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPATM EKLQLFRGDT ILIKGKKRKD TVCIALADET CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDDVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV TNEHFHTALG NSNPSALRET VVEVPNVSWN DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG GGSGGDGGGA
601: ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDSALLRP GRLDQLIYIP LPDEDSRLNI FKAALRKSPI AKDVDIGALA KYTQGFSGAD ITEICQRACK
701: YAIRENIEKD IEKEKRRSEN PEAMEEDGVD EVSEIKAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFEN SAGSGATTGV ADPFATSAAA
801: AGDDDDLYN

Arabidopsis Description

CDC48AAT3G09840 protein [Source:UniProtKB/TrEMBL;Acc:B9DI55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.