Factsheet for PGSC0003DMT400050662

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400027096
PGSC0003DMT400031321
PGSC0003DMT400050662
PGSC0003DMT400055513
PGSC0003DMT400070819

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09840.1	PGSC0003DMT400070819	AT1G71830.1	15592873
AT3G09840.1	PGSC0003DMT400070819	AT1G71830.1	16473966
AT3G09840.1	PGSC0003DMT400070819	AT1G71830.1	16621602
AT3G09840.1	PGSC0003DMT400070819	AT1G71830.1	17693538
AT3G09840.1	PGSC0003DMT400027096	AT3G09840.1	15592873
AT3G09840.1	PGSC0003DMT400031321	AT3G09840.1	15592873
AT3G09840.1	PGSC0003DMT400050662	AT3G09840.1	15592873
AT3G09840.1	PGSC0003DMT400055513	AT3G09840.1	15592873
AT3G09840.1	PGSC0003DMT400027096	AT3G09840.1	16621602
AT3G09840.1	PGSC0003DMT400031321	AT3G09840.1	16621602
AT3G09840.1	PGSC0003DMT400050662	AT3G09840.1	16621602
AT3G09840.1	PGSC0003DMT400055513	AT3G09840.1	16621602
AT3G09840.1	PGSC0003DMT400027096	AT3G09840.1	17693538
AT3G09840.1	PGSC0003DMT400031321	AT3G09840.1	17693538
AT3G09840.1	PGSC0003DMT400050662	AT3G09840.1	17693538
AT3G09840.1	PGSC0003DMT400055513	AT3G09840.1	17693538

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	99.5	99.5
PGSC0003DMT400031321	Potato	cytosol	96.89	96.89
PGSC0003DMT400027096	Potato	cytosol	93.91	93.56
VIT_08s0040g01480.t01	Wine grape	cytosol	93.17	93.05
PGSC0003DMT400055513	Potato	cytosol	93.17	92.94
Bra001297.1-P	Field mustard	cytosol	91.93	91.47
CDX73996	Canola	cytosol	91.93	91.47
CDY07941	Canola	cytosol	91.93	91.47
CDY54618	Canola	cytosol	91.8	91.46
AT5G03340.1	Thale cress	cytosol	91.93	91.36
GSMUA_Achr5P15500_001	Banana	cytosol, plasma membrane	91.8	91.35
AT3G09840.1	Thale cress	cytosol	91.8	91.35
CDY41581	Canola	cytosol	91.68	91.34
Bra034089.1-P	Field mustard	cytosol	91.8	91.23
CDY11249	Canola	cytosol	90.43	91.23
Bra029795.1-P	Field mustard	cytosol	91.68	91.22
CDY22207	Canola	cytosol	91.68	91.11
CDY41316	Canola	cytosol, extracellular	91.68	91.11
Zm00001d048409_P001	Maize	cytosol	90.56	90.67
Zm00001d027707_P001	Maize	cytosol, plasma membrane	90.81	90.58
GSMUA_Achr4P26800_001	Banana	cytosol	90.81	90.36
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	90.68	90.23
Zm00001d032859_P006	Maize	plasma membrane	90.68	90.12
CDX80862	Canola	cytosol, plastid	90.31	89.86
Zm00001d014124_P001	Maize	cytosol, plasma membrane	90.43	89.77
PGSC0003DMT400046624	Potato	cytosol	88.2	87.65
GSMUA_Achr9P23550_001	Banana	mitochondrion	86.96	86.85
TraesCSU01G001000.1	Wheat	cytosol	85.84	86.05
VIT_06s0061g00340.t01	Wine grape	cytosol	80.75	84.97
TraesCS3B01G154400.1	Wheat	cytosol	82.11	83.88
Os10t0442600-01	Rice	cytosol, nucleus, plasma membrane, plastid	20.25	83.59
TraesCS1B01G419200.1	Wheat	cytosol	81.86	83.52
HORVU0Hr1G006340.1	Barley	cytosol	81.74	83.5
TraesCS3A01G144500.1	Wheat	cytosol	55.28	83.49
TraesCS3A01G145100.1	Wheat	cytosol	81.74	83.4
TraesCS3B01G171200.1	Wheat	cytosol	81.24	82.99
KXG40206	Sorghum	cytosol	80.62	82.99
EER95525	Sorghum	cytosol	80.25	82.82
TraesCS1B01G259200.1	Wheat	cytosol	81.12	82.76
TraesCS3B01G172000.1	Wheat	cytosol	80.5	82.65
TraesCS3B01G172100.1	Wheat	cytosol	80.99	82.53
TraesCS3B01G171400.1	Wheat	cytosol	74.53	82.53
TraesCS3A01G145000.1	Wheat	cytosol	71.3	82.47
HORVU3Hr1G029450.1	Barley	cytosol	81.74	81.44
HORVU3Hr1G029440.1	Barley	cytosol	81.74	80.84
TraesCS3B01G171300.1	Wheat	cytosol	72.67	80.25
TraesCS5B01G323100.1	Wheat	cytosol	57.39	79.52
TraesCS1A01G248500.1	Wheat	cytosol	58.63	79.06
Zm00001d032117_P001	Maize	cytosol	27.45	69.06
Bra005733.1-P	Field mustard	cytosol	91.06	66.39
PGSC0003DMT400018483	Potato	cytosol	19.75	38.78
PGSC0003DMT400072919	Potato	cytosol	28.7	37.81
PGSC0003DMT400079514	Potato	cytosol	17.02	34.42
PGSC0003DMT400006190	Potato	cytosol	13.66	33.74
PGSC0003DMT400015455	Potato	mitochondrion	30.68	32.37
PGSC0003DMT400023656	Potato	cytosol	17.14	32.24
PGSC0003DMT400012446	Potato	cytosol	17.02	31.93
PGSC0003DMT400046254	Potato	cytosol	32.42	31.75
PGSC0003DMT400053010	Potato	cytosol	15.65	30.51
PGSC0003DMT400078301	Potato	cytosol	15.65	30.43
PGSC0003DMT400063574	Potato	cytosol	15.28	29.08
PGSC0003DMT400040872	Potato	cytosol	15.9	28.83
PGSC0003DMT400051744	Potato	cytosol	15.65	28.38
PGSC0003DMT400038718	Potato	cytosol	14.16	26.33
PGSC0003DMT400013679	Potato	cytosol	28.7	24.84

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:102597683	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf
InterPro:CDC4_N-term_subdom	InterPro:Cdc48_dom2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	UniProt:M1BQM8	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359
PFAM:PF02933	EnsemblPlantsGene:PGSC0003DMG400019676	PGSC:PGSC0003DMG400019676	EnsemblPlants:PGSC0003DMT400050662	ScanProsite:PS00674	PANTHER:PTHR23077
PANTHER:PTHR23077:SF127	SMART:SM00382	SMART:SM01072	SMART:SM01073	SUPFAM:SSF50692	SUPFAM:SSF52540
SUPFAM:SSF54585	TIGRFAMs:TIGR01243	UniParc:UPI000295AAE8	RefSeq:XP_006340221.1	SEG:seg	:

Description

Cell division cycle protein 48 homolog [Source:PGSC_GENE;Acc:PGSC0003DMG400019676]

Coordinates

chr11:-:41979913..41985842

Molecular Weight (calculated)

89524.6 Da

IEP (calculated)

4.973

GRAVY (calculated)

-0.412

Length

805 amino acids

Sequence
(BLAST)

001: MSHQAESSDS KNAKKDFSTA ILERKKAANR LIVDETVNDD NSVVALHPAT MEKLQLFRGD TILIKGKKRK DTVVIALADE TCDEPKIRMN KVVRSNLRVR
101: LGDVVSVHQC PDVKYGKRVH ILPIDDTIEG LTGDLFDAFL KPYFLEAYRP LRKGDNFLVR GGMRSVEFKV IETDPGEYCV VAPDTEIFCE GEPVKREDEE
201: RLDEVGYDDV GGVRKQMAQI RELVELPLRH PQLFKSIGVK PPKGILLYGP PGSGKTLIAR AVANETGAFF FCINGPEIMS KLAGESESNL RKAFEEAEKN
301: APSIIFIDEI DSIAPKREKT HGEVERRIVS QLLTLMDGLK SRAHVIVMGA TNRPNSIDPA LRRFGRFDRE IDIGVPDEVG RLEVLRIHTK NMKLAEEVDL
401: ERIGKDTHGY VGADLAALCT EAALQCIREK MDVIDLEDDT IDAEVLNSMA VTNEHFQTAL GTSNPSALRE TVVEVPNVSW QDIGGLENVK RELQETVQYP
501: VEHPEKFEKF GMSPSKGVLF YGPPGCGKTL LAKAIANECQ ANFISIKGPE LLTMWFGESE ANVREIFDKA RQSAPCVLFF DELDSIATQR GSSSGDAGGA
601: ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDPALLRP GRLDQLIYIP LPDEDSRHQI FKACLRKSPL SKDIDLRALA KHTQGFSGAD ITEICQRACK
701: YAIRENIEKD IEREKRRQEN PDSMDEDVDE VPEIKPAHFE ESMKYARRSV SDADIRKYQA FAQTLQQSRG FGTEFRFAEA SSGGTAAADP FATSNAAADD
801: DDLYS

Best Arabidopsis Sequence Match ( AT3G53230.1 )
(BLAST)

001: MANQAESSDS KGTKKDFSTA ILEKKKAANR LVVDEAINDD NSVVSLHPDT MEKLQLFRGD TILIKGKKRK DTVCIALADE TCDEPKIRMN KVVRSNLRVR
101: LGDVISVHQC PDVKYGNRVH ILPLDDTIEG VSGNIFDAYL KPYFLEAYRP VRKGDLFLVR GGMRSIEFKV IETDPAEYCV VAPDTEIFCE GEPIKREDEE
201: RLDEVGYDDV GGVRKQMAQI RELVELPLRH PQLFKSIGVK PPKGILLYGP PGSGKTLIAR AVANETGAFF FCINGPEIMS KLAGESESNL RKAFEEAEKN
301: APSIIFIDEI DSIAPKREKT HGEVERRIVS QLLTLMDGLK SRAHVIVMGA TNRPNSIDPA LRRFGRFDRE IDIGVPDEIG RLEVLRIHTK NMKLAEDVDL
401: ERVSKDTHGY VGADLAALCT EAALQCIREK MDVIDLDDEE IDAEILNSMA VSNDHFQTAL GNSNPSALRE TVVEVPNVSW EDIGGLENVK RELQETVQYP
501: VEHPEKFEKF GMSPSKGVLF YGPPGCGKTL LAKAIANECQ ANFISIKGPE LLTMWFGESE ANVREIFDKA RQSAPCVLFF DELDSIATQR GNSVGDAGGA
601: ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDPALLRP GRLDQLIYIP LPDEESRYQI FKSCLRKSPV AKDVDLRALA KYTQGFSGAD ITEICQRSCK
701: YAIRENIEKD IEKERKRAES PEAMEEDEEE IAEIKAGHFE ESMKYARRSV SDADIRKYQA FAQTLQQSRG FGSEFRFPDA PTGTTGAFPG AAATVGGVDP
801: FATSGGAADD DDLYS

Arabidopsis Description

CDC48DCell division control protein 48 homolog D [Source:UniProtKB/Swiss-Prot;Acc:Q9SCN8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.