Factsheet for PGSC0003DMT400078301

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006190	Potato	cytosol	78.26	99.39
Solyc06g082630.2.1	Tomato	cytosol, plastid	99.28	99.28
Solyc06g082660.2.1	Tomato	cytosol, nucleus	99.03	99.03
PGSC0003DMT400053010	Potato	cytosol	97.1	97.34
Bra020378.1-P	Field mustard	cytosol	90.34	92.57
CDY02806	Canola	cytosol	90.34	92.57
CDY32714	Canola	cytosol	90.34	92.57
Bra002662.1-P	Field mustard	cytosol	90.1	92.33
CDX88666	Canola	cytosol	90.1	92.33
CDY32995	Canola	cytosol, extracellular	90.1	92.33
CDY43865	Canola	cytosol	90.1	92.33
CDY58566	Canola	cytosol	90.1	92.33
AT5G58290.1	Thale cress	cytosol	90.58	91.91
Bra006775.1-P	Field mustard	cytosol	86.72	91.82
KRH30674	Soybean	cytosol, nucleus	91.3	91.53
VIT_06s0004g08220.t01	Wine grape	cytosol	92.03	91.15
GSMUA_Achr7P21960_001	Banana	cytosol	92.03	78.72
PGSC0003DMT400040872	Potato	cytosol	45.17	42.12
PGSC0003DMT400051744	Potato	cytosol	44.93	41.89
PGSC0003DMT400079514	Potato	cytosol	37.44	38.94
PGSC0003DMT400063574	Potato	cytosol	37.68	36.88
PGSC0003DMT400023656	Potato	cytosol	37.92	36.68
PGSC0003DMT400012446	Potato	cytosol	37.92	36.6
PGSC0003DMT400038718	Potato	cytosol	35.51	33.95
PGSC0003DMT400018483	Potato	cytosol	25.12	25.37
PGSC0003DMT400072919	Potato	cytosol	28.26	19.15
PGSC0003DMT400050662	Potato	cytosol	30.43	15.65
PGSC0003DMT400031321	Potato	cytosol	30.19	15.53
PGSC0003DMT400055513	Potato	cytosol	30.19	15.49
PGSC0003DMT400027096	Potato	cytosol	29.95	15.35
PGSC0003DMT400046624	Potato	cytosol	29.95	15.31
PGSC0003DMT400015455	Potato	mitochondrion	27.29	14.81
PGSC0003DMT400046254	Potato	cytosol	27.78	13.99
PGSC0003DMT400013679	Potato	cytosol	26.09	11.61

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:102579765	MapMan:19.2.6.2.1.3	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0030163	GO:GO:0036402	GO:GO:1901800	UniProt:M1CZU6	InterPro:P-loop_NTPase
PFAM:PF00004	EnsemblPlantsGene:PGSC0003DMG400030476	PGSC:PGSC0003DMG400030476	EnsemblPlants:PGSC0003DMT400078301	ScanProsite:PS00674	InterPro:PSMC4
PANTHER:PTHR23073	PANTHER:PTHR23073:SF8	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242	UniParc:UPI000294CC08
RefSeq:XP_006350894.1	:	:	:	:	:

Description

26S protease regulatory subunit 6B homolog [Source:PGSC_GENE;Acc:PGSC0003DMG400030476]

Coordinates

chr6:-:57703304..57708640

Molecular Weight (calculated)

46706.1 Da

IEP (calculated)

5.707

GRAVY (calculated)

-0.404

Length

414 amino acids

Sequence
(BLAST)

001: MASAMLLDPK PTPELPATRP DLSSHDVPSE NGEDDLYARL KSLQRQLEFI EIQEEYVKDE LKNLRREHLR AQEEVKRIQS VPLVIGQFME MIDQNNAIVG
101: STTGSNYYVR ILSTINRELL KPSASVALHR HSNALVDVLP PEADSSISLL SQSEKPDVTY NDIGGCDIQK QEIREAVELP LTHHELYKQI GIDPPRGVLL
201: YGPPGTGKTM LAKAVAHHTT AAFIRVVGSE FVQKYLGEGP RMVRDVFRLA KENAPAIIFI DEVDAIATAR FDAQTGADRE VQRILMELLN QMDGFDQTVN
301: VKVIMATNRA DTLDPALLRP GRLDRKIEFP LPDRRQKRLV FQVCTAKMNL GDEVDLEDYV SRPDKISAAE ITAICQEAGM HAVRKNRYVI LPKDFEKGYR
401: TNVKKPDTDF EFYK

Best Arabidopsis Sequence Match ( AT5G58290.1 )
(BLAST)

001: MASAAVASMV LDPKASPALM DLSTADEEDL YGRLKSLERQ LEFTDIQEEY VKDEQKNLKR ELLRAQEEVK RIQSVPLVIG QFMEMVDQNN GIVGSTTGSN
101: YYVRILSTIN RELLKPSASV ALHRHSNALV DVLPPEADSS ISLLSQSEKP DVSYNDIGGC DIQKQEIREA VELPLTHHEL YKQIGIDPPR GVLLYGPPGT
201: GKTMLAKAVA NHTTAAFIRV VGSEFVQKYL GEGPRMVRDV FRLAKENAPA IIFIDEVDAI ATARFDAQTG ADREVQRILM ELLNQMDGFD QTVNVKVIMA
301: TNRADTLDPA LLRPGRLDRK IEFPLPDRRQ KRLVFQVCTS KMNLSDEVDL EDYVSRPDKI SAAEIAAICQ EAGMHAVRKN RYVILPKDFE KGYRANVKKP
401: DTDFEFYK

Arabidopsis Description

RPT3RPT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UAH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.