CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus

Predictor Summary:

cytosol 6
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G107280.1	Barley	cytosol	83.78	93.51
Bra002662.1-P	Field mustard	cytosol	91.28	93.32
Bra020378.1-P	Field mustard	cytosol	91.28	93.32
CDX88666	Canola	cytosol	91.28	93.32
CDY02806	Canola	cytosol	91.28	93.32
CDY32714	Canola	cytosol	91.28	93.32
CDY32995	Canola	cytosol, extracellular	91.28	93.32
CDY43865	Canola	cytosol	91.28	93.32
CDY58566	Canola	cytosol	91.28	93.32
KRG98107	Soybean	cytosol	95.16	93.13
KRH30673	Soybean	cytosol, nucleus	95.16	92.91
Bra006775.1-P	Field mustard	cytosol	87.89	92.84
AT5G58290.1	Thale cress	cytosol	91.04	92.16
Solyc06g082660.2.1	Tomato	cytosol, nucleus	92.01	91.79
PGSC0003DMT400053010	Potato	cytosol	91.53	91.53
PGSC0003DMT400078301	Potato	cytosol	91.53	91.3
Solyc06g082630.2.1	Tomato	cytosol, plastid	91.53	91.3
HORVU3Hr1G067470.2	Barley	cytosol	49.15	89.43
HORVU2Hr1G014000.1	Barley	cytosol	88.38	89.02
TraesCS2B01G499600.1	Wheat	cytosol	89.1	88.25
TraesCS2D01G476000.1	Wheat	cytosol	89.1	88.25
TraesCS2A01G086400.1	Wheat	cytosol	88.62	88.19
TraesCS2D01G083900.1	Wheat	golgi	88.62	88.19
TraesCS2B01G100400.1	Wheat	cytosol, plastid	88.38	87.95
Os02t0325100-01	Rice	plastid	89.1	87.83
KXG39890	Sorghum	cytosol	88.86	87.38
TraesCS2A01G475900.1	Wheat	cytosol	89.35	86.42
Zm00001d050616_P002	Maize	plastid	89.59	85.25
EER91182	Sorghum	cytosol	83.54	82.14
GSMUA_Achr7P21960_001	Banana	cytosol	91.77	78.31
Zm00001d015886_P002	Maize	cytosol	76.51	58.3
KRH19693	Soybean	cytosol	45.52	42.44
KRH32292	Soybean	cytosol, nucleus	45.52	42.44
KRH67524	Soybean	nucleus	45.76	42.38
KRG95799	Soybean	cytosol, nucleus	45.52	42.15
KRH45565	Soybean	endoplasmic reticulum	19.85	40.2
KRH61120	Soybean	endoplasmic reticulum	38.01	39.45
KRH51796	Soybean	cytosol	38.01	39.45
KRH44668	Soybean	cytosol, mitochondrion, nucleus	39.71	39.23
KRH46990	Soybean	nucleus	39.71	39.23
KRH05868	Soybean	cytosol, nucleus	37.77	39.1
KRH15139	Soybean	cytosol, endoplasmic reticulum, nucleus	37.77	39.1
KRH06311	Soybean	cytosol	38.26	37.09
KRH69005	Soybean	nucleus	38.26	37.09
KRH47728	Soybean	cytosol, nucleus	38.26	37.09
KRG97280	Soybean	cytosol, nucleus	38.26	37.09
KRH06953	Soybean	cytosol	24.21	37.04
KRH33891	Soybean	endoplasmic reticulum, nucleus	37.77	36.88
KRG92899	Soybean	cytosol, nucleus	37.77	36.88
KRH68501	Soybean	nucleus	36.56	35.53
KRG96790	Soybean	mitochondrion	26.39	32.83
KRH51488	Soybean	mitochondrion	33.41	32.62
KRH00031	Soybean	plastid	25.18	30.14
KRG99061	Soybean	cytosol	13.56	28.0
KRG94277	Soybean	cytosol	12.59	25.12
KRH45638	Soybean	cytosol	15.5	19.94
KRH70928	Soybean	cytosol	27.6	18.81
KRH25081	Soybean	cytosol, endoplasmic reticulum, mitochondrion	27.6	15.75
KRH19916	Soybean	endoplasmic reticulum, mitochondrion	30.51	15.54
KRH67721	Soybean	endoplasmic reticulum, nucleus	30.27	15.47
KRG96011	Soybean	endoplasmic reticulum, mitochondrion, nucleus	30.27	15.47
KRH32530	Soybean	endoplasmic reticulum, mitochondrion	30.27	15.38
KRH63585	Soybean	endoplasmic reticulum	30.27	15.36
KRH54357	Soybean	cytosol, endoplasmic reticulum, mitochondrion	30.27	15.36
KRH30601	Soybean	cytosol	29.54	15.14
KRH26511	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	29.54	15.12
KRH22853	Soybean	cytosol, endoplasmic reticulum, mitochondrion	29.54	15.12
KRH10420	Soybean	mitochondrion	17.92	14.95
KRH44049	Soybean	nucleus	28.33	14.79
KRG96401	Soybean	mitochondrion	26.88	12.08
KRH66707	Soybean	plastid	28.33	11.19
KRH68139	Soybean	cytosol	17.43	10.75
KRH50491	Soybean	cytosol	25.18	9.2
KRG95054	Soybean	plastid	14.29	7.65

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100820353	MapMan:19.2.6.2.1.3	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	EMBL:ACUP02007055	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil	EnsemblPlantsGene:GLYMA_11G200000
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008540	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0017025	GO:GO:0019538
GO:GO:0030163	GO:GO:0030433	GO:GO:0031595	GO:GO:0031597	GO:GO:0036402	GO:GO:0045899
GO:GO:1901800	UniProt:I1LLZ2	EnsemblPlants:KRH30674	ProteinID:KRH30674	ProteinID:KRH30674.1	InterPro:P-loop_NTPase
PFAM:PF00004	ScanProsite:PS00674	InterPro:PSMC4	PANTHER:PTHR23073	PANTHER:PTHR23073:SF8	SMART:SM00382
SUPFAM:SSF52540	TIGRFAMs:TIGR01242	UniParc:UPI000233CCC3	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:27848339..27852594

Molecular Weight (calculated)

46415.9 Da

IEP (calculated)

5.570

GRAVY (calculated)

-0.306

Length

413 amino acids

Sequence
(BLAST)

001: MAASAMVLDP PPFLPSTKSA YLQGGDATAF DEEDLYSRLK SLVRQLEFVD IQEEYVKDEL KNLRRELLRA MEEVKRIQSV PLVIGQFMEM IDQNNGIVGS
101: TAGSNYYVRI LSTINRELLK PSASVALHRH SNALVEVLPP EADSSISLLS QSEKPDVTYN DIGGCDIQKQ EIREAVELPL THHELYKQIG IDPPRGVLLY
201: GPPGTGKTML AKAVANHTTA AFIRVVGSEF VQKYLGEGPR MVRDVFRLAK ENAPAIIFID EVDAIATARF DAQTGADREV QRILMELLNQ MDGFDQTVNV
301: KVIMATNRAD TLDPALLRPG RLDRKIEFPL PDRRQKRLVF QVCTAKMNLS DEVDLEDYVS RPDKISAAEI SAICQEAGMH AVRKNRYVIL PKDFEKGYRT
401: NVKKPDTNFE FYK

Best Arabidopsis Sequence Match ( AT5G58290.1 )
(BLAST)

001: MASAAVASMV LDPKASPALM DLSTADEEDL YGRLKSLERQ LEFTDIQEEY VKDEQKNLKR ELLRAQEEVK RIQSVPLVIG QFMEMVDQNN GIVGSTTGSN
101: YYVRILSTIN RELLKPSASV ALHRHSNALV DVLPPEADSS ISLLSQSEKP DVSYNDIGGC DIQKQEIREA VELPLTHHEL YKQIGIDPPR GVLLYGPPGT
201: GKTMLAKAVA NHTTAAFIRV VGSEFVQKYL GEGPRMVRDV FRLAKENAPA IIFIDEVDAI ATARFDAQTG ADREVQRILM ELLNQMDGFD QTVNVKVIMA
301: TNRADTLDPA LLRPGRLDRK IEFPLPDRRQ KRLVFQVCTS KMNLSDEVDL EDYVSRPDKI SAAEIAAICQ EAGMHAVRKN RYVILPKDFE KGYRANVKKP
401: DTDFEFYK

Arabidopsis Description

RPT3RPT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UAH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.