Factsheet for Zm00001d050616_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG39890	Sorghum	cytosol	94.93	98.1
GSMUA_Achr6P12250_001	Banana	cytosol	67.97	97.36
HORVU2Hr1G107280.1	Barley	cytosol	82.95	97.3
PGSC0003DMT400006190	Potato	cytosol	72.12	96.01
HORVU2Hr1G014000.1	Barley	cytosol	90.09	95.37
Os02t0325100-01	Rice	plastid	91.94	95.23
TraesCS2A01G086400.1	Wheat	cytosol	90.78	94.94
TraesCS2D01G083900.1	Wheat	golgi	90.78	94.94
TraesCS2B01G100400.1	Wheat	cytosol, plastid	90.55	94.7
TraesCS2D01G476000.1	Wheat	cytosol	90.32	94.0
TraesCS2B01G499600.1	Wheat	cytosol	90.09	93.77
TraesCS2A01G475900.1	Wheat	cytosol	90.55	92.04
HORVU3Hr1G067470.2	Barley	cytosol	47.7	91.19
CDY58566	Canola	cytosol	84.79	91.09
CDY43865	Canola	cytosol	84.79	91.09
CDY32995	Canola	cytosol, extracellular	84.79	91.09
CDX88666	Canola	cytosol	84.79	91.09
Bra002662.1-P	Field mustard	cytosol	84.79	91.09
CDY32714	Canola	cytosol	84.56	90.84
CDY02806	Canola	cytosol	84.56	90.84
Bra020378.1-P	Field mustard	cytosol	84.56	90.84
Bra006775.1-P	Field mustard	cytosol	81.57	90.54
AT5G58290.1	Thale cress	cytosol	85.02	90.44
Solyc06g082660.2.1	Tomato	cytosol, nucleus	85.94	90.1
VIT_06s0004g08220.t01	Wine grape	cytosol	86.64	89.95
Solyc06g082630.2.1	Tomato	cytosol, plastid	85.71	89.86
KRH30674	Soybean	cytosol, nucleus	85.25	89.59
KRG98107	Soybean	cytosol	86.18	88.63
KRH30673	Soybean	cytosol, nucleus	85.48	87.71
Zm00001d015886_P002	Maize	cytosol	84.1	67.34
Zm00001d045163_P001	Maize	mitochondrion	17.51	43.18
Zm00001d022573_P001	Maize	cytosol, extracellular, plasma membrane	44.24	42.95
Zm00001d028801_P001	Maize	cytosol, extracellular	43.09	41.93
Zm00001d007215_P001	Maize	cytosol	44.24	41.38
Zm00001d046539_P002	Maize	cytosol, mitochondrion	37.79	41.21
Zm00001d015788_P001	Maize	plasma membrane	37.33	40.5
Zm00001d053649_P002	Maize	cytosol, mitochondrion	36.87	40.0
Zm00001d053616_P002	Maize	cytosol	36.64	37.68
Zm00001d016439_P003	Maize	cytosol, extracellular, plasma membrane	36.64	37.68
Zm00001d037481_P003	Maize	cytosol, extracellular, plasma membrane	37.33	37.67
Zm00001d018309_P003	Maize	cytosol	35.94	36.62
Zm00001d018409_P007	Maize	cytosol	36.41	35.27
Zm00001d052078_P003	Maize	cytosol	35.94	34.14
Zm00001d032117_P001	Maize	cytosol	19.59	26.56
Zm00001d025776_P002	Maize	cytosol	27.65	21.13
Zm00001d009592_P001	Maize	cytosol	11.75	19.47
Zm00001d050303_P001	Maize	cytosol	30.18	16.58
Zm00001d035913_P002	Maize	cytosol, mitochondrion	27.19	16.1
Zm00001d045566_P001	Maize	cytosol, mitochondrion	28.34	16.02
Zm00001d032859_P006	Maize	plasma membrane	29.26	15.68
Zm00001d014124_P001	Maize	cytosol, plasma membrane	29.26	15.66
Zm00001d027707_P001	Maize	cytosol, plasma membrane	29.03	15.61
Zm00001d048409_P001	Maize	cytosol	28.8	15.55
Zm00001d022096_P002	Maize	mitochondrion	26.96	15.46
Zm00001d049140_P006	Maize	cytosol, plastid	25.58	11.04
Zm00001d002462_P010	Maize	mitochondrion	26.27	10.72
Zm00001d049974_P004	Maize	peroxisome	21.89	8.52
Zm00001d002717_P001	Maize	mitochondrion	6.91	7.35
Zm00001d053999_P001	Maize	cytosol	6.68	7.06
Zm00001d027244_P001	Maize	cytosol	4.61	5.46
Zm00001d033491_P001	Maize	cytosol, plasma membrane, plastid	0.92	1.58

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.3	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	EntrezGene:542160
UniProt:A0A1D6Q2Q4	InterPro:AAA+_ATPase	ProteinID:AQK52862.1	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163
GO:GO:0036402	GO:GO:1901800	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	InterPro:PSMC4
PANTHER:PTHR23073	PANTHER:PTHR23073:SF8	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242	UniParc:UPI000843276A
EnsemblPlantsGene:Zm00001d050616	EnsemblPlants:Zm00001d050616_P002	EnsemblPlants:Zm00001d050616_T002	SEG:seg	:	:

Description

26S protease regulatory subunit 6B%3B 26S proteasome regulatory complex ATPase RPT3 isoform 1%3B 26S proteasome regulatory complex ATPase RPT3 isoform 2

Coordinates

chr4:-:104893593..104901497

Molecular Weight (calculated)

48416.1 Da

IEP (calculated)

6.337

GRAVY (calculated)

-0.350

Length

434 amino acids

Sequence
(BLAST)

001: MSAATTGPAP SVATPMAPPP SYPASSTASS SISASAEEEE DLYGRLKSLQ RHMEFVEIQE EYVKDEQKNL KRELLRAQEE VKRIQSVPLV IGQFMEMVDG
101: NNGIVGSTTG SNYYVRILST INRELLKPSA SVALHRHSNA LVDVLPPEAD SSISLLGSSE KPNVTYNDIG GCDIQKQEIR EAVELPLTHH ELYKQIGIDP
201: PRGVLLYGPP GTGKTMLAKA VAHHTTAAFI RVVGSEFVQK YLGEGPRMVR DVFRLAKENA PAIIFIDEVD AIATARFDAQ TGADREVQRI LMELLNQMDG
301: FDQTVNVKVI MATNRADTLD PALLRPGRLD RKIEFPLPDR RQKRLVFQVC TAKMNLSDEV DLEDYVSRPD KISAADIIEF KCGVKDYRFK IAAICQEAGM
401: HAVRKNRYVI LPKDFEKGYR TNVKKPETDF DFYK

Best Arabidopsis Sequence Match ( AT1G09100.1 )
(BLAST)

001: MATAMAEDTS FEGDQLASMT TDDIGRASRL LANEIRILKE ESQRTNLDLE SVKEKIKENQ EKIKLNKQLP YLVGNIVEIL EMSPEDDAEE DGANIDLDSQ
101: RKGKCVVLKT STRQTIFLPV VGLVDPDTLK PGDLVGVNKD SYLILDTLPS EYDSRVKAME VDEKPTEDYN DIGGLEKQIQ ELVEAIVLPM THKEQFEKLG
201: IRPPKGVLLY GPPGTGKTLM ARACAAQTNA TFLKLAGPQL VQMFIGDGAK LVRDAFLLAK EKSPCIIFID EIDAIGTKRF DSEVSGDREV QRTMLELLNQ
301: LDGFSSDDRI KVIAATNRAD ILDPALMRSG RLDRKIEFPH PTEEARGRIL QIHSRKMNVN ADVNFEELAR STDDFNGAQL KAVCVEAGML ALRRDATEVN
401: HEDFNEGIIQ VQAKKKASLN YYA

Arabidopsis Description

RPT5B26S proteasome regulatory subunit 6A homolog B [Source:UniProtKB/Swiss-Prot;Acc:O04019]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.