Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
plasma membrane: 27341663 |
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER99961 | Sorghum | cytosol | 99.33 | 99.33 |
| Os07t0691800-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 97.99 | 97.77 |
| TraesCS2D01G087900.1 | Wheat | cytosol, golgi | 97.09 | 96.66 |
| TraesCS2B01G105700.1 | Wheat | cytosol | 97.09 | 96.66 |
| TraesCS2A01G090000.1 | Wheat | cytosol | 96.87 | 96.44 |
| Zm00001d007215_P001 | Maize | cytosol | 99.11 | 95.47 |
| Zm00001d028801_P001 | Maize | cytosol, extracellular | 94.63 | 94.84 |
| GSMUA_Achr4P05850_001 | Banana | cytosol | 89.26 | 94.1 |
| KRG95799 | Soybean | cytosol, nucleus | 92.84 | 93.05 |
| KRH32292 | Soybean | cytosol, nucleus | 92.17 | 93.0 |
| KRH19693 | Soybean | cytosol | 92.17 | 93.0 |
| GSMUA_Achr4P05840_001 | Banana | cytosol | 87.47 | 92.87 |
| KRH67524 | Soybean | nucleus | 92.62 | 92.83 |
| AT4G29040.1 | Thale cress | cytosol | 91.72 | 92.55 |
| AT2G20140.1 | Thale cress | cytosol | 91.5 | 92.33 |
| CDX97472 | Canola | cytosol | 91.5 | 91.91 |
| CDY35245 | Canola | cytosol | 91.05 | 91.87 |
| Bra011079.1-P | Field mustard | cytosol | 91.05 | 91.87 |
| Bra010342.1-P | Field mustard | cytosol | 91.28 | 91.69 |
| VIT_07s0005g05160.t01 | Wine grape | cytosol | 91.28 | 91.69 |
| CDY14224 | Canola | cytosol | 91.28 | 91.69 |
| CDY06847 | Canola | cytosol | 90.83 | 91.65 |
| CDX92914 | Canola | cytosol, extracellular | 90.83 | 91.65 |
| Solyc06g083620.2.1 | Tomato | nucleus, plastid | 90.6 | 91.22 |
| PGSC0003DMT400040872 | Potato | cytosol | 90.38 | 90.99 |
| PGSC0003DMT400051744 | Potato | cytosol | 90.16 | 90.77 |
| HORVU2Hr1G014770.2 | Barley | cytosol, plastid | 88.81 | 90.02 |
| HORVU3Hr1G095530.3 | Barley | mitochondrion, plastid | 45.19 | 80.48 |
| HORVU1Hr1G091080.1 | Barley | mitochondrion, plastid | 44.97 | 80.08 |
| CDY59958 | Canola | cytosol | 62.64 | 76.92 |
| Bra024165.1-P | Field mustard | cytosol | 55.48 | 76.78 |
| Zm00001d045163_P001 | Maize | mitochondrion | 20.36 | 51.7 |
| Zm00001d050616_P002 | Maize | plastid | 42.95 | 44.24 |
| Zm00001d037481_P003 | Maize | cytosol, extracellular, plasma membrane | 40.49 | 42.09 |
| Zm00001d046539_P002 | Maize | cytosol, mitochondrion | 37.36 | 41.96 |
| Zm00001d016439_P003 | Maize | cytosol, extracellular, plasma membrane | 39.37 | 41.71 |
| Zm00001d053616_P002 | Maize | cytosol | 39.37 | 41.71 |
| Zm00001d015788_P001 | Maize | plasma membrane | 36.69 | 41.0 |
| Zm00001d053649_P002 | Maize | cytosol, mitochondrion | 36.47 | 40.75 |
| Zm00001d018409_P007 | Maize | cytosol | 39.6 | 39.51 |
| Zm00001d018309_P003 | Maize | cytosol | 37.36 | 39.2 |
| Zm00001d052078_P003 | Maize | cytosol | 37.36 | 36.54 |
| Zm00001d015886_P002 | Maize | cytosol | 35.12 | 28.97 |
| Zm00001d032117_P001 | Maize | cytosol | 18.79 | 26.25 |
| Zm00001d025776_P002 | Maize | cytosol | 27.96 | 22.01 |
| Zm00001d009592_P001 | Maize | cytosol | 10.96 | 18.7 |
| Zm00001d035913_P002 | Maize | cytosol, mitochondrion | 26.62 | 16.23 |
| Zm00001d027707_P001 | Maize | cytosol, plasma membrane | 28.86 | 15.99 |
| Zm00001d048409_P001 | Maize | cytosol | 28.64 | 15.92 |
| Zm00001d045566_P001 | Maize | cytosol, mitochondrion | 27.29 | 15.89 |
| Zm00001d032859_P006 | Maize | plasma membrane | 28.64 | 15.8 |
| Zm00001d050303_P001 | Maize | cytosol | 27.74 | 15.7 |
| Zm00001d014124_P001 | Maize | cytosol, plasma membrane | 28.41 | 15.66 |
| Zm00001d022096_P002 | Maize | mitochondrion | 25.28 | 14.93 |
| Zm00001d049140_P006 | Maize | cytosol, plastid | 28.19 | 12.54 |
| Zm00001d002462_P010 | Maize | mitochondrion | 26.62 | 11.19 |
| Zm00001d049974_P004 | Maize | peroxisome | 23.04 | 9.24 |
| Zm00001d002717_P001 | Maize | mitochondrion | 7.38 | 8.09 |
| Zm00001d053999_P001 | Maize | cytosol | 6.94 | 7.54 |
| Zm00001d027244_P001 | Maize | cytosol | 4.92 | 6.01 |
| Zm00001d033491_P001 | Maize | cytosol, plasma membrane, plastid | 2.01 | 3.56 |
Protein Annotations
| Gene3D:1.10.8.60 | EntrezGene:100501403 | MapMan:19.2.6.2.1.2 | Gene3D:2.40.50.140 | InterPro:26S_Psome_P45-like | InterPro:26S_subunit_4 |
| Gene3D:3.40.50.300 | UniProt:A0A1D6IP54 | InterPro:AAA+_ATPase | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | GO:GO:0000166 |
| GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0030163 | GO:GO:0036402 | GO:GO:1901800 |
| ProteinID:ONM61035.1 | InterPro:P-loop_NTPase | PFAM:PF00004 | ScanProsite:PS00674 | PANTHER:PTHR23073 | PANTHER:PTHR23073:SF42 |
| SMART:SM00382 | SUPFAM:SSF52540 | TIGRFAMs:TIGR01242 | UniParc:UPI000221DB44 | EnsemblPlantsGene:Zm00001d022573 | EnsemblPlants:Zm00001d022573_P001 |
| EnsemblPlants:Zm00001d022573_T001 | SEG:seg | : | : | : | : |
Description
26S proteasome regulatory subunit 4 homolog A
Coordinates
chr7:-:180143517..180146427
Molecular Weight (calculated)
49437.8 Da
IEP (calculated)
6.073
GRAVY (calculated)
-0.407
Length
447 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQGTPGGMG KQGGAGDRKP GDAGDKKDKK FEPPAAPSRV GRKQRKQKGA EAAARLPNVA PLSKCRLRLL KLDRVKDYLL MEEEFVAAQE RLRPQEDKAE
101: EDRSKVDDLR GTPMSVGSLE EIIDESHAIV SSSVGPEYYV GILSFVDKDQ LEPGCSILMH NKVLSVVGIL QDEVDPMVSV MKVEKAPLES YADIGGLDAQ
201: IQEIKEAVEL PLTHPELYED IGIRPPKGVI LYGEPGTGKT LLAKAVANST SATFLRVVGS ELIQKYLGDG PKLVRELFRV ADELSPSIVF IDEIDAVGTK
301: RYDAHSGGER EIQRTMLELL NQLDGFDSRG DVKVILATNR IESLDPALLR PGRIDRKIEF PLPDIKTRRR IFQIHTSKMT LADDVNLEEF VMTKDEFSGA
401: DIKAICTEAG LLALRERRMK VTHADFKKAK EKVMYKKKEG VPDGLYM
101: EDRSKVDDLR GTPMSVGSLE EIIDESHAIV SSSVGPEYYV GILSFVDKDQ LEPGCSILMH NKVLSVVGIL QDEVDPMVSV MKVEKAPLES YADIGGLDAQ
201: IQEIKEAVEL PLTHPELYED IGIRPPKGVI LYGEPGTGKT LLAKAVANST SATFLRVVGS ELIQKYLGDG PKLVRELFRV ADELSPSIVF IDEIDAVGTK
301: RYDAHSGGER EIQRTMLELL NQLDGFDSRG DVKVILATNR IESLDPALLR PGRIDRKIEF PLPDIKTRRR IFQIHTSKMT LADDVNLEEF VMTKDEFSGA
401: DIKAICTEAG LLALRERRMK VTHADFKKAK EKVMYKKKEG VPDGLYM
001: MGQGPSGGLN RQGDRKPDGG DKKEKKFEPA APPARVGRKQ RKQKGPEAAA RLPTVTPSTK CKLRLLKLER IKDYLLMEEE FVANQERLKP QEEKAEEDRS
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: HSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLSED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHP DFKKAKEKVM FKKKEGVPEG LYM
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: HSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLSED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHP DFKKAKEKVM FKKKEGVPEG LYM
Arabidopsis Description
RPT2ARPT2a [Source:UniProtKB/TrEMBL;Acc:A0A178V3V3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.