Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G087900.1 | Wheat | cytosol, golgi | 92.06 | 90.42 |
| TraesCS2B01G105700.1 | Wheat | cytosol | 92.06 | 90.42 |
| Os07t0691800-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 90.93 | 89.51 |
| Zm00001d022573_P001 | Maize | cytosol, extracellular, plasma membrane | 90.02 | 88.81 |
| EER99961 | Sorghum | cytosol | 90.02 | 88.81 |
| HORVU4Hr1G055060.1 | Barley | cytosol | 89.57 | 87.78 |
| GSMUA_Achr4P05850_001 | Banana | cytosol | 83.67 | 87.03 |
| AT4G29040.1 | Thale cress | cytosol | 87.07 | 86.68 |
| CDY35245 | Canola | cytosol | 86.85 | 86.46 |
| Bra011079.1-P | Field mustard | cytosol | 86.85 | 86.46 |
| AT2G20140.1 | Thale cress | cytosol | 86.62 | 86.23 |
| KRH32292 | Soybean | cytosol, nucleus | 86.62 | 86.23 |
| KRH19693 | Soybean | cytosol | 86.62 | 86.23 |
| CDX92914 | Canola | cytosol, extracellular | 86.62 | 86.23 |
| CDY06847 | Canola | cytosol | 86.62 | 86.23 |
| KRG95799 | Soybean | cytosol, nucleus | 87.07 | 86.1 |
| VIT_07s0005g05160.t01 | Wine grape | cytosol | 86.85 | 86.07 |
| PGSC0003DMT400040872 | Potato | cytosol | 86.62 | 86.04 |
| KRH67524 | Soybean | nucleus | 86.85 | 85.87 |
| GSMUA_Achr4P05840_001 | Banana | cytosol | 81.86 | 85.75 |
| CDX97472 | Canola | cytosol | 86.39 | 85.62 |
| Solyc06g083620.2.1 | Tomato | nucleus, plastid | 86.17 | 85.59 |
| CDY14224 | Canola | cytosol | 86.17 | 85.39 |
| Bra010342.1-P | Field mustard | cytosol | 86.17 | 85.39 |
| PGSC0003DMT400051744 | Potato | cytosol | 85.71 | 85.14 |
| Zm00001d007215_P001 | Maize | cytosol | 89.34 | 84.91 |
| HORVU3Hr1G095530.3 | Barley | mitochondrion, plastid | 43.76 | 76.89 |
| HORVU1Hr1G091080.1 | Barley | mitochondrion, plastid | 43.31 | 76.1 |
| CDY59958 | Canola | cytosol | 62.59 | 75.82 |
| Bra024165.1-P | Field mustard | cytosol | 55.33 | 75.54 |
| HORVU3Hr1G067470.2 | Barley | cytosol | 27.89 | 54.19 |
| HORVU2Hr1G107280.1 | Barley | cytosol | 41.04 | 48.92 |
| HORVU2Hr1G014000.1 | Barley | cytosol | 42.18 | 45.37 |
| HORVU6Hr1G087650.1 | Barley | cytosol, plasma membrane | 39.0 | 44.79 |
| HORVU7Hr1G084550.2 | Barley | cytosol | 38.78 | 40.43 |
| HORVU6Hr1G032570.5 | Barley | cytosol | 37.19 | 40.1 |
| HORVU7Hr1G119300.13 | Barley | cytosol | 35.37 | 38.81 |
| HORVU7Hr1G090380.3 | Barley | cytosol | 37.19 | 37.61 |
| HORVU6Hr1G083150.1 | Barley | cytosol | 36.05 | 37.32 |
| HORVU6Hr1G036990.7 | Barley | cytosol | 38.55 | 36.8 |
| HORVU7Hr1G032070.1 | Barley | cytosol | 36.51 | 36.26 |
| HORVU6Hr1G049800.1 | Barley | cytosol | 4.08 | 32.14 |
| HORVU2Hr1G086170.2 | Barley | cytosol | 28.34 | 21.97 |
| HORVU0Hr1G038060.2 | Barley | cytosol | 25.62 | 21.36 |
| HORVU0Hr1G013350.2 | Barley | cytosol | 11.34 | 16.23 |
| HORVU7Hr1G002880.2 | Barley | plastid | 28.12 | 15.48 |
| HORVU0Hr1G006340.1 | Barley | cytosol | 26.3 | 14.72 |
| HORVU2Hr1G011690.1 | Barley | cytosol | 27.44 | 14.68 |
| HORVU1Hr1G060370.1 | Barley | cytosol | 26.76 | 14.62 |
| HORVU4Hr1G072010.4 | Barley | cytosol | 26.98 | 14.6 |
| HORVU4Hr1G071960.2 | Barley | cytosol | 26.98 | 14.57 |
| HORVU1Hr1G060340.2 | Barley | cytosol | 26.76 | 14.51 |
| HORVU1Hr1G049910.1 | Barley | cytosol | 26.76 | 14.5 |
| HORVU3Hr1G029450.1 | Barley | cytosol | 26.3 | 14.36 |
| HORVU3Hr1G029440.1 | Barley | cytosol | 26.3 | 14.25 |
| HORVU1Hr1G015310.16 | Barley | cytosol, plastid | 28.34 | 12.44 |
| HORVU2Hr1G104530.9 | Barley | cytosol | 24.72 | 11.94 |
| HORVU4Hr1G016200.10 | Barley | cytosol, plastid | 27.21 | 11.93 |
| HORVU5Hr1G069560.1 | Barley | cytosol | 5.67 | 11.79 |
| HORVU5Hr1G078590.8 | Barley | plastid | 23.13 | 9.03 |
| HORVU7Hr1G058410.7 | Barley | cytosol, peroxisome | 22.45 | 8.94 |
| HORVU6Hr1G053620.1 | Barley | cytosol | 7.26 | 8.91 |
| HORVU3Hr1G029660.1 | Barley | cytosol, peroxisome | 0.45 | 5.88 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.6.2.1.2 | Gene3D:2.40.50.140 | InterPro:26S_Psome_P45-like | InterPro:26S_subunit_4 | Gene3D:3.40.50.300 |
| UniProt:A0A287H5I6 | InterPro:AAA+_ATPase | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | ncoils:Coil | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0019538 | GO:GO:0030163 | GO:GO:0036402 | GO:GO:1901800 | EnsemblPlantsGene:HORVU2Hr1G014770 |
| EnsemblPlants:HORVU2Hr1G014770.2 | InterPro:P-loop_NTPase | PFAM:PF00004 | ScanProsite:PS00674 | PANTHER:PTHR23073 | PANTHER:PTHR23073:SF42 |
| SMART:SM00382 | SUPFAM:SSF52540 | TIGRFAMs:TIGR01242 | UniParc:UPI000B46D7DD | SEG:seg | : |
Description
No Description!
Coordinates
chrchr2H:-:32347470..32350658
Molecular Weight (calculated)
45632.4 Da
IEP (calculated)
5.454
GRAVY (calculated)
-0.294
Length
441 amino acids
Sequence
(BLAST)
(BLAST)
001: MXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXRKQRR QKGPEAAARL PNVAPLSKCR LRLLKLDRVK DYLLMEEEFV AAQERLRPTE EKTEEDRSKV
101: DDLRGTPMSV GSLEEIIDES HAIVSSSVGP EYYVGILSFV DKDQLEPGCS ILMHNKVLSV VGILQDEVDP MVSVMKVEKA PLESYADIGG LDAQIQEIKE
201: AVELPLTHPE LYEDIGIRPP KGVILYGEPG TGKTLLAKAV ANSTSATFLR VVGSELIQKY LGDGPKLVRE LFRVADELSP SIVFIDEIDA VGTKRYDAHS
301: GGEREIQRTM LELLNQLDGF DSRGDVKVIL ATNRIESLDP ALLRPGRIDR KIEFPLPDIK TRRRIFQIHT AKMTLSDDVN LEEFVMTKDE FSGADIKAIC
401: TESGLLALRE RRMKVTHADF KKAKEKVMFK KKEGVPEGLY M
101: DDLRGTPMSV GSLEEIIDES HAIVSSSVGP EYYVGILSFV DKDQLEPGCS ILMHNKVLSV VGILQDEVDP MVSVMKVEKA PLESYADIGG LDAQIQEIKE
201: AVELPLTHPE LYEDIGIRPP KGVILYGEPG TGKTLLAKAV ANSTSATFLR VVGSELIQKY LGDGPKLVRE LFRVADELSP SIVFIDEIDA VGTKRYDAHS
301: GGEREIQRTM LELLNQLDGF DSRGDVKVIL ATNRIESLDP ALLRPGRIDR KIEFPLPDIK TRRRIFQIHT AKMTLSDDVN LEEFVMTKDE FSGADIKAIC
401: TESGLLALRE RRMKVTHADF KKAKEKVMFK KKEGVPEGLY M
001: MGQGPSGGLN RQGDRKPDGG DKKEKKFEPA APPARVGRKQ RKQKGPEAAA RLPTVTPSTK CKLRLLKLER IKDYLLMEEE FVANQERLKP QEEKAEEDRS
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: HSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLSED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHP DFKKAKEKVM FKKKEGVPEG LYM
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: HSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLSED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHP DFKKAKEKVM FKKKEGVPEG LYM
Arabidopsis Description
RPT2ARPT2a [Source:UniProtKB/TrEMBL;Acc:A0A178V3V3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.